Hkul011669.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- -
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000004.1:3834304-3835695[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00044 0.033 15.3 2.5 1 23 112 135 112 135 0.98 2 11 1.4e-05 0.0011 20.0 2.0 1 23 145 167 145 167 0.97 3 11 3.1e-05 0.0023 18.9 0.4 1 23 173 195 173 195 0.97 4 11 9.2e-06 0.00068 20.6 0.8 1 23 201 223 201 223 0.98 5 11 4e-06 0.0003 21.7 2.5 1 23 229 251 229 251 0.98 6 11 4.9e-06 0.00037 21.4 1.7 1 23 257 279 257 279 0.97 7 11 4.1e-06 0.00031 21.7 1.2 1 23 284 307 284 307 0.96 8 11 0.47 35 5.7 1.5 2 23 313 331 312 331 0.80 9 11 0.00069 0.051 14.7 1.9 1 23 337 359 337 359 0.97 10 11 0.22 17 6.8 0.6 1 23 365 390 365 390 0.87 11 11 0.00084 0.063 14.4 2.2 1 23 396 419 396 419 0.97
Sequence Information
- Coding Sequence
- ATGAAATACAGCGAGATGCTTATGATCTGTTCTGGCATAAGCACTTCGCCGGATAATGGATATCCCAATAAATTATGCCAGTCGTGCATATTGGAGCTCCCCGTTGCGTGCAAATTTGTTAAAATGTGTAAAGCATCCGATGCACTGCTTCAAAAATTTTACGCAGGGAAAAAATCTGAAGCGGCACTTAGCGGCGACGGAGTCGATTTAAAAATGGAAATAAAAGTAGAGTTCAGTCCGTCCTCCATCAAATCAGAGGCTTCAAAAAAGAGTACTAGTAAAAGAAGGCTGATCAAACGACAGGACAAAAATGCGAAACTAGACATCCCTACTTTTCAATGCCCCGGCTGCGATTTTGTTACGGAAAAACAATGTCGTCTTAAAAAACACATGAAAATTAATCACATTGAACTGTTAGATCAATTAAACGATTTCCCCTGCTTGACATGTGGAAAGCATTTTAAACGAAAAAGAGATCTAGTTGTTCATTCCCgcattcattctggagagaaacccttcgcatgtaaatattgtccgatgagatttgcacaatcgggaacacttaatgaacacgaaagaaatcacaccggagaaacaccttatgcttgtaaattttgtccgagggtcttctcgagtgggtcatcgttttggaggcatcggagagtacacactaatgaacgtccttactcgtgcgaactctgcgggaaaactttctctctcagctccacactgaaacatcataaacttgtgcacaccgatgaacgtcctcacatatgcagcgtgtgcgggaagacagcgaaatctaaatattacttgagactgcacatgagagtccacgcggagaagggatttatttgcgagcagtgcgggaaaaaattctccaaaaaacccaccctacaaaatcacaTCACTAAAATGCATTCAGATGTAGCCGGACAATGTCAGCAATGCAAAAAGCACACGTCTAATCTGGCCGAGCATATGATCATTCACACGGCCGAGTCGCCATATCAATGCCGGATATGCAGTCGCAAGTTTAAATTGAAAAACAGTCTATCTCTTCATATAACATTGCACAATAATGCTGATAAATATAAATGCACTGTTGAAGGTTGCAAGAAAGCGTTCCCAAAAGTCAACATGCTCGACTTTCATACCCGCAAAGTGCATTCAAATGAGACTTCCCATGTTTGCCGTTATTGTTCAAAGGGATTTTTCAGAATAAATGATCTCTCTAGACATGTCAATACTCTCCACCCAGATGAAAGTAATAAATAA
- Protein Sequence
- MKYSEMLMICSGISTSPDNGYPNKLCQSCILELPVACKFVKMCKASDALLQKFYAGKKSEAALSGDGVDLKMEIKVEFSPSSIKSEASKKSTSKRRLIKRQDKNAKLDIPTFQCPGCDFVTEKQCRLKKHMKINHIELLDQLNDFPCLTCGKHFKRKRDLVVHSRIHSGEKPFACKYCPMRFAQSGTLNEHERNHTGETPYACKFCPRVFSSGSSFWRHRRVHTNERPYSCELCGKTFSLSSTLKHHKLVHTDERPHICSVCGKTAKSKYYLRLHMRVHAEKGFICEQCGKKFSKKPTLQNHITKMHSDVAGQCQQCKKHTSNLAEHMIIHTAESPYQCRICSRKFKLKNSLSLHITLHNNADKYKCTVEGCKKAFPKVNMLDFHTRKVHSNETSHVCRYCSKGFFRINDLSRHVNTLHPDESNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00799486; iTF_00800379;
- 90% Identity
- -
- 80% Identity
- -