Hkul029009.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- -
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000051.1:700270-702843[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0067 0.5 11.5 3.1 1 23 200 222 200 222 0.98 2 15 0.61 45 5.4 3.9 1 23 228 250 228 250 0.95 3 15 0.00095 0.071 14.2 3.8 1 23 256 278 256 278 0.97 4 15 0.00018 0.013 16.5 2.7 1 23 282 305 282 305 0.97 5 15 5.4e-05 0.0041 18.1 2.1 1 23 340 362 340 362 0.97 6 15 0.00012 0.0092 17.0 3.7 1 23 368 390 368 390 0.98 7 15 3.5e-05 0.0027 18.7 0.4 1 23 396 418 396 418 0.95 8 15 0.0006 0.045 14.8 4.5 2 23 424 446 423 446 0.96 9 15 0.022 1.7 9.9 0.8 1 23 453 475 453 475 0.97 10 15 0.0048 0.36 12.0 3.5 1 23 478 500 478 500 0.98 11 15 0.23 17 6.7 0.9 1 23 510 533 510 533 0.92 12 15 1e-05 0.00078 20.4 1.5 1 23 539 561 539 561 0.98 13 15 0.0001 0.0077 17.3 2.4 1 23 566 588 566 588 0.97 14 15 7.6e-05 0.0057 17.7 0.5 1 23 594 617 594 617 0.97 15 15 5e-05 0.0037 18.2 1.0 1 20 622 641 622 644 0.94
Sequence Information
- Coding Sequence
- ATGGAAACTCGAAACGAGGATTCAGCCACCGTATCTCAATATGATAAAATCTGTCGAATATGCCTTACTGATGCTGATGGTCTTCAATATATTTTTTCGCCGATATCTGATGATAATACCTGTACTTACGCGGAATTGATTTCATATGCTTCAACTGTGGAGATTGTTGAAACAGATACCCTACCCATGAAAGTATGTCCGGATTGTTTGGAAAGAACTTTATCAGCTTATGAATTTCGGCAACAAGTAGAACATTCTGAGGCAATTCTCAAAGACTATGTCAATCTGTGCGGATCTTCTGATTCCGTATTAATTCTTGTTTCGGAAGATTCTTCAAAAAGTATCATAAATTCAGGACAACCTTTAGATTTGTTAAAGGAAAGTCCATGGGAAGAGTCTATTAAAGATGAAAAAGATGACTCAAATATCAATGAAAATCATTTAATGGTTATAGAAAACTCTGCAGTGGAAAAATGTGATGTCGATCAAGTCTCCATGAATGATTCAAAACTAGAAGCAAACGAATCTAACAAAAGCAATGAAGAATTGAATCTTTCCGGGAGTGTGAAGATAAACCAGATTCAGAAACGCTCCGACTACGATTGTACAATGTGCTCCGACTCTTTTGATAGCGTACACCAGCTCAAAAAGCACACGCAGACTCACCCGAAAGGTTCGAGGCACTACTGTCGTATTTGTTTCAGGTCTTACGCCAGAGCAAGCATCATGAAAAGACATTTCTTCACCCACAACGGCGTCAAAGATCACCGGTGTAAGTTTTGCGGGAAAGCTTTTTTCTATATCCACGCACTGCGAGCGCATATTATGTTTCACAAAAAGAATTTCGCTTGTAAGTTTTGTAGAAAACGGTTTGCATTTAAACAGAATTTAATAGAACATCTAAAAACGTTTCATTTGAATGAATTTTTCGGTGATGTTAATGATGTTGTCGTTCATGGCATTCGAGATGATCCTGAAAGCGGTTTGGATCAAATGGATAATGATAAAAAACAACAATTCGATTGCTCAATGTGTAATAAGACATTTAATAATATGAAAGATTTAATTCAACATAAAAAGATGCATCCGATTGGAATGAAACACACGTGTCGTGTGTGCTCGAAAACGTACACGCAAGCCGCTTCTCTTCACCGTCATTTAATCACACATTCTGCTCTGAAGCCGTATCTTTGTCCATTATGCGGAAAAGCTTATTCACTTCGCAACAGTCTTAAAAGTCACATGCTATACCACAAAGATAAAATACTGAAATGTGAGCATTGTCAGAAGAAATTTCATACTAATTACGATATCAGAGAACACATACGTGTGTCTCATTCAGATGAGAGATATAATTTCATGTGCGAACTGTGCGGAAAGTTGTGCACTTCAGGAAGTAGATTAGCAGTACACCGAGAAAGCCACAGTAGTTTTTGCTGTCCATACTGTGCGAAAACGTATCGAAATTTGTACATTTTAAAAATGCACATCAAAAAACATAATGATGATCCGAAACCGAAGAATGTTTACACCTGCGATTACTGCGGAACTAAACGAGCTTTGAAGATATTCATTGAGAGGCATATATCCAAGAAACATCTTAAAGAACAATCCTTTAAGTGCAGTGAATGCAATAAAGCGTTCTTCGACAAAAACGGATTAAAGCAACACACAAACGTACATTCGAAACATTCACATCAGTGTGATGTGTGCGGTAGGAGACTCACCAGTAAAAGATCGCTGAAGCTGCATCAGAATTTGCACACGGGGCATAGGCCCTTTTCGTGTGATATTTGTGGCAAAGGATTCGCTTCGGCGAGCGCTAAACACGTGCACCAAAAGCGTTGGCATATAGATGGAAAATATCAGTGTAAGATGTGCTCAGAGAAGTTTAGATATGCCAGTGATCTTTACAAGCATATGCCCATTCATACGAGTTGTATTAAAATACAGTCTATTCTTTCGAAAATAGTATGA
- Protein Sequence
- METRNEDSATVSQYDKICRICLTDADGLQYIFSPISDDNTCTYAELISYASTVEIVETDTLPMKVCPDCLERTLSAYEFRQQVEHSEAILKDYVNLCGSSDSVLILVSEDSSKSIINSGQPLDLLKESPWEESIKDEKDDSNINENHLMVIENSAVEKCDVDQVSMNDSKLEANESNKSNEELNLSGSVKINQIQKRSDYDCTMCSDSFDSVHQLKKHTQTHPKGSRHYCRICFRSYARASIMKRHFFTHNGVKDHRCKFCGKAFFYIHALRAHIMFHKKNFACKFCRKRFAFKQNLIEHLKTFHLNEFFGDVNDVVVHGIRDDPESGLDQMDNDKKQQFDCSMCNKTFNNMKDLIQHKKMHPIGMKHTCRVCSKTYTQAASLHRHLITHSALKPYLCPLCGKAYSLRNSLKSHMLYHKDKILKCEHCQKKFHTNYDIREHIRVSHSDERYNFMCELCGKLCTSGSRLAVHRESHSSFCCPYCAKTYRNLYILKMHIKKHNDDPKPKNVYTCDYCGTKRALKIFIERHISKKHLKEQSFKCSECNKAFFDKNGLKQHTNVHSKHSHQCDVCGRRLTSKRSLKLHQNLHTGHRPFSCDICGKGFASASAKHVHQKRWHIDGKYQCKMCSEKFRYASDLYKHMPIHTSCIKIQSILSKIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -