Hkul018257.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- -
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000046.1:3128683-3138052[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0057 0.43 11.8 0.0 1 20 168 187 168 190 0.93 2 15 0.0099 0.74 11.0 1.5 1 20 196 215 196 218 0.93 3 15 0.00024 0.018 16.1 4.9 1 23 224 247 224 247 0.98 4 15 9.4e-06 0.0007 20.5 1.8 1 23 253 275 253 275 0.96 5 15 0.0019 0.14 13.2 3.7 1 23 280 303 280 303 0.95 6 15 0.00022 0.016 16.2 1.9 2 23 312 332 311 332 0.96 7 15 8.4e-05 0.0063 17.5 7.1 1 23 337 359 337 359 0.98 8 15 7.9e-06 0.00059 20.8 0.7 1 23 365 387 365 387 0.98 9 15 2.4e-06 0.00018 22.4 2.2 1 23 393 415 393 415 0.99 10 15 9.6e-05 0.0071 17.4 0.8 1 23 421 443 421 443 0.98 11 15 4.2e-05 0.0032 18.5 6.4 1 23 449 471 449 471 0.98 12 15 5.8e-06 0.00043 21.2 0.6 1 23 477 499 477 499 0.98 13 15 0.0022 0.17 13.1 3.6 1 22 505 526 505 529 0.90 14 15 0.3 22 6.4 4.0 2 22 566 586 565 589 0.84 15 15 3.1 2.3e+02 3.2 4.2 1 19 686 704 686 710 0.89
Sequence Information
- Coding Sequence
- ATGAGCTCCGAAAGAAATTCGGAGGAAGCTGGTCATGATACCGATACGAATTCTGAGGAGGATGTCCAGTCAGATAGTTTTAAATTAAAATCGGAAAATATTTCTGATTACAATAACGGTGATAGACCTGGGGGAGATGGCACAAGTTCAGAAGACATAAGCTCCAGTGACACTGATGGCGAAATATTAATTATGGGAGATGCAAATCCTGGACACATTACTCATCATAATCAATATTACAAATCTTTTAAATTTGGAACACCGGTTCTAGAAGATGTTAAATTACCTGATATATCCATGCCCGATGGTTTTGGTCGGGATATAGCTGTTGTTACTATAAAACAGGAATACGAAGGTGATGAGGATATGCATATGGCTGTTCCAGAGGTTGTATTGGAGGAACCAGAAATTAAAAAAGAAGAGGAGATTAAAACTAAGCAAAAAAAATTAAAGAGTGGATTCTCAGTGGCAGAGTTGGCAGAATTGAATGTACGATTTGTTTATGCCTGCCAAATATGTCAATTGCCGTTTGATGATCCGGAGCTTTTGAAAGAACATCTTCCGGTGCACGATCAAGTCGGCACATACTTGTGCAAGACTTGTGATAGGGTTTATCAAAGTATAGATGACTTAAGGACGCATATGATATGTCATATAAAGTCAGGCAACTACAAGTGTGAAGACTGCAACAAGATGTACCATCATTCACAGAGCTTGATGGCTCATAGGAAAAGGTGGCACACTTCGGAGCGACCTCACTTTTGTGATATCTGTGGCAGAACATACAGCCTAAAGAACGATCTCACTGCTCACATGAAAAGTCACAGCGATGATAAGCATCCTTGTGAGTTTTGTGACAAGGCTTTCCGGACTGATAGATACTTGCGGATTCACACAAAACATGTTCATCTTGGTCACAAGTATGCTCGAATCGAATGTAACATTTGCAACAAAAGTTTTCAGAAAAAGAATCTGCTCACCCATAAAAAGCTGCATGAAGAAAAAGTTCACAAATGTCATTATTGTGGGAAATGTATGACCACTTCGTATAGTCTAGTGGCGCATATAAGAAGACACGAAGGTGTGAAACCATTTGTGTGTGAGCTAtgtaacaaggcatttgtagacaaagggaagctggtgagacatattcactctcataagggaacacgtgatttccagtgtgacatttgtgaaaagagtttctcagaaagtcaatatcttagacaacataaaaggactcatgataatagccgTGAATACCCATGCAGAGTATGCGGGACAAAATTCAAGAGTATGAATTCAGTTTGGTCACATATGAGAAAACATACGCATACAAATCGATATGAATGCCATTTCTGTGGGAAAACTTGTTATAGACCTGACCACTTGCGCTCGCATCTCATTAGTCATACAGGAATCAAAGACTTCCAAtgtgaaatttgttcaaaacgttttgcgaaagcatacgacttgacggagcacaggcggggacacagcggagagaggccgtacaattgtaaattgtgtaacagagcatttgcTAGGCACGGTGAATTCAGGAAGCACAAACTAAGCAAGTACCACCGAGAGAGAGAGCGAGAGGCGGGATTGAGCGAAATGACAGCGGGTGTTGAAAATGTAACGGATGTGCCGAAACCGCTTTTCGATTCCCTCTCTGTCCCTCGACCCCATCACTGCTATCCTTGCGACAAACGATTCACCACGCCGTCTCGCCTCGCCATGCACTCCAAAAGAAAATCACATCTGGCAAAAAGCGGTCAAGTGTTGACCGCCGGTTCAGATAGAATCAGCGAATTGAGAACGTTTCGCACTGATATGATAGCAGATGCCAGACACAAAACTCGTAAATATCATTTGGAAAAACTTCGAGAAGTTGAAGCTTCCCAAGAGGATGCTGACCGAGCACCGCAGCAGGATCAGCAGACGCCTCATCCTACATCGCAGGCAGTATCTCATGATGATCGTGAATCACAAGCAGTTCCTCCGACTGGAACATCTCAAAGCAGTTCTCCGGTATTGCCATTTCGAAATTTTCATTGCACACCGTGTGCCAAAAGTTTTGTCACTGCCGCAAACTTCACTTTACATTGTAAAAGGAAGTCTCATATGGCTAAAGGACTCACTCCCTTATTGGCCGGAGCTATTGTACCAGGTGTTGTTTCAGATTCGCCGGATGATAATAATTGA
- Protein Sequence
- MSSERNSEEAGHDTDTNSEEDVQSDSFKLKSENISDYNNGDRPGGDGTSSEDISSSDTDGEILIMGDANPGHITHHNQYYKSFKFGTPVLEDVKLPDISMPDGFGRDIAVVTIKQEYEGDEDMHMAVPEVVLEEPEIKKEEEIKTKQKKLKSGFSVAELAELNVRFVYACQICQLPFDDPELLKEHLPVHDQVGTYLCKTCDRVYQSIDDLRTHMICHIKSGNYKCEDCNKMYHHSQSLMAHRKRWHTSERPHFCDICGRTYSLKNDLTAHMKSHSDDKHPCEFCDKAFRTDRYLRIHTKHVHLGHKYARIECNICNKSFQKKNLLTHKKLHEEKVHKCHYCGKCMTTSYSLVAHIRRHEGVKPFVCELCNKAFVDKGKLVRHIHSHKGTRDFQCDICEKSFSESQYLRQHKRTHDNSREYPCRVCGTKFKSMNSVWSHMRKHTHTNRYECHFCGKTCYRPDHLRSHLISHTGIKDFQCEICSKRFAKAYDLTEHRRGHSGERPYNCKLCNRAFARHGEFRKHKLSKYHREREREAGLSEMTAGVENVTDVPKPLFDSLSVPRPHHCYPCDKRFTTPSRLAMHSKRKSHLAKSGQVLTAGSDRISELRTFRTDMIADARHKTRKYHLEKLREVEASQEDADRAPQQDQQTPHPTSQAVSHDDRESQAVPPTGTSQSSSPVLPFRNFHCTPCAKSFVTAANFTLHCKRKSHMAKGLTPLLAGAIVPGVVSDSPDDNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00799452;
- 90% Identity
- -
- 80% Identity
- -