Hkul002264.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- -
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000031.1:3298903-3309509[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00026 0.019 16.0 6.6 1 23 214 236 214 236 0.96 2 13 5.3e-06 0.0004 21.3 1.8 3 23 250 270 249 270 0.98 3 13 0.043 3.2 9.0 5.0 2 23 279 300 279 300 0.98 4 13 1.4e-06 0.00011 23.1 0.4 1 23 306 328 306 328 0.97 5 13 0.00034 0.025 15.6 1.4 3 23 336 356 334 356 0.91 6 13 4.2e-06 0.00031 21.6 5.7 2 23 363 384 362 384 0.97 7 13 6.8e-05 0.0051 17.8 0.8 1 23 390 412 390 412 0.98 8 13 5.1e-05 0.0038 18.2 4.3 2 23 419 440 418 440 0.97 9 13 5e-05 0.0037 18.2 0.6 1 23 446 468 446 468 0.98 10 13 2.7e-05 0.002 19.1 2.3 1 23 474 496 474 496 0.98 11 13 1.2e-05 0.00093 20.1 1.9 1 23 502 524 502 524 0.98 12 13 0.0027 0.2 12.8 0.6 1 23 530 552 530 552 0.95 13 13 9.9e-06 0.00074 20.5 0.4 1 23 586 608 586 608 0.97
Sequence Information
- Coding Sequence
- ATGGCCACTCCCAATGAATTACAGCTCGACAAGATATGTACAGCTTGTTTATTGATAAAAAAGGACATGAGGCCGCTTTTTGGTGAATTAATAGCCGATATGCTGATGTCCTGTGCGTCAGTGCGGGTTAATGAAAGCGATGGCCTTCCTCTGCAGCTTTGTCTACAGTGCGTTCATCAAGTGTCGCGATCCTACGCATTTAAGCAGCAAGTGGAAAAGTCTGACAACATTCTGCAAACCTATATCAATGACTGTCCACAAAGGGACCTTATCAAACATCAGCATCCGCCAGACGCTGAAATCAGCATGCAGGACATGGTCACCGACAATGAAGTCCAATTCACATACATTGACAATTCCCATTCGCGAGGATCGAGAGATTCAACCGATTCGGGACCCGTCATGGAAGCATTCTACATCACCACCTCCAACCATTCAGCAGATGCTAACAGCGCAACTCCGCAATTACAGGAAAATGCGCTTAAGGTAGAAGACAAAGATTCTTCTAAAAGCAGCGACAAGAATCTAGATGAAGATGTGTGCACCATCAAAGAGCAGCCGCCCAGCGACGCTGAAGAAGATGACAGCTACTTGGAGCTGGCCACATTCCAAGCGTCCGCTTCCGTCACCCCCGGCCGCCACATTTGCAATTTGTGTCACCGGGAATTCAAACACGCCAAGTGGCTGAAGACTCACATGCGTCTGCACAGCAATTGGATAAAGGCAAACTGTAAGAAGCCACCGATGTGTACCATATGCCACCGCTCGTTCAAAGGGCCGGGAATGTTGAAGCTGCACATGCGCACTCACGAGGAGAGGCCGCAGCGCCAGCCCACCTGCACCATCTGCCACCGCCTCTTCAAGACCAAAACTATCCTCTATCGACACCGCCAGACCCACTTCGAGCAAAAGACCCATCCGTGCACGATCTGTGACAAAAGTTTCATCAGCAACTATGCCCTGCAGGCTCACCTGGCGAGGCACCGCGGCGAGAAGCCTCACGCGTGCATCACGTGCGGCAAAACTTTCTACAACACCACCGATCTTAAGGTCCACATCCGCCTGCACACCGGAGAGAAGCCTCTGACGTGCGGCGACTGCGGGAAAACTTTCCGCCGCCATTCCACCCTCTGCCAGCATATCAAGAAGCATCGGGGCATCCGGGATCACGTCTGCTCTGTCTGCTCTAAAGCGTTCTTCGAAGTCTCGAAGCTGACGGCCCACATGAGAGTTCATACCGGAGAAAAGCCGTGCGAGTGTCCATTCTGTTCGCGTTGCTTTGCGCAGCAGTCGGCTTTGATCTATCATCGGAGAACTCACACCGGAGAAAGGCCGTATCCGTGCAAACAGTGCGATGCCCGCTTCACCACCTCCTCGGCTAGAAACAATCACATGGTCACGCACACCGGCATCAAAAAATTCCCGTGCACCATTTGCAATAAAGGCTGCACGAACCGCACAGAACTCCGGATCCACATGACGAAGCACACCGGTGAGAAACTCTTCCCCTGCACTCAATGCGATCAGAGATTCTCCACTGCCTCTTATCTCGCCGTGCACCGAAGACATCACACGGGAGAAAAGAAATATGTATGCATCACGTGTAACAAAGGCTACGTAGAATCAGGGTCGTACAAGAAGCATCTGCGGACGCACTCACGTGCTGAAATAGAAGCGGCGGAAGCGAGAAAGGCCCAGGAGGAAGCGACCAATTCCCAGACATCCAGCGGTCCGCCTCAGCTGACGACCAAAAACTACGCTTGCTCACTGTGCCCCAAGTCGTACACCCAAGGGCAGAATCTCAAAAAGCACATGGCTTCCCATGGACTCCTCAATCCTTCtgcacttgtagcggtcacaaatgcgcatttagcacagcaacaacaacaacagcagcagcagcaacagcagcaacaacaacagcagcaacaacaacaacagcagcagcagcagcagcaacagcagcagcagcaacaacaacagcatcaacttgtccagcaacaatcgcaacctcaactcgtgcagaccattcagattcaccctcatgttgccggacatcacggccatcAGCCGATACAGATCCACGCGGTGGGAGTGCATCAGGTACAGCAGCAGCAAGTCCACGTGGCCGCATCCGCTTGCCAGCCTGTTCAAATTCCCAACATTGTGCAGGTTCAGCCGGGTCACGTCGCCGTCGGTGGACTGCAGCAGCACGAACTGTCAGCCGTTTCCGTCGGCAACATCGCCCACAGAATCATTCTTCAGCCGCCCCATCCCATGTATCTCCACCACTAA
- Protein Sequence
- MATPNELQLDKICTACLLIKKDMRPLFGELIADMLMSCASVRVNESDGLPLQLCLQCVHQVSRSYAFKQQVEKSDNILQTYINDCPQRDLIKHQHPPDAEISMQDMVTDNEVQFTYIDNSHSRGSRDSTDSGPVMEAFYITTSNHSADANSATPQLQENALKVEDKDSSKSSDKNLDEDVCTIKEQPPSDAEEDDSYLELATFQASASVTPGRHICNLCHREFKHAKWLKTHMRLHSNWIKANCKKPPMCTICHRSFKGPGMLKLHMRTHEERPQRQPTCTICHRLFKTKTILYRHRQTHFEQKTHPCTICDKSFISNYALQAHLARHRGEKPHACITCGKTFYNTTDLKVHIRLHTGEKPLTCGDCGKTFRRHSTLCQHIKKHRGIRDHVCSVCSKAFFEVSKLTAHMRVHTGEKPCECPFCSRCFAQQSALIYHRRTHTGERPYPCKQCDARFTTSSARNNHMVTHTGIKKFPCTICNKGCTNRTELRIHMTKHTGEKLFPCTQCDQRFSTASYLAVHRRHHTGEKKYVCITCNKGYVESGSYKKHLRTHSRAEIEAAEARKAQEEATNSQTSSGPPQLTTKNYACSLCPKSYTQGQNLKKHMASHGLLNPSALVAVTNAHLAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQLVQQQSQPQLVQTIQIHPHVAGHHGHQPIQIHAVGVHQVQQQQVHVAASACQPVQIPNIVQVQPGHVAVGGLQQHELSAVSVGNIAHRIILQPPHPMYLHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00799448;
- 90% Identity
- iTF_00799448;
- 80% Identity
- -