Hkul005134.1
Basic Information
- Insect
- Himalopsyche kuldschensis
- Gene Symbol
- Znf296_1
- Assembly
- GCA_028554975.1
- Location
- JAHFWI010000006.1:19080644-19092485[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.5e-06 0.00026 21.9 0.3 2 23 188 210 187 210 0.95 2 15 0.00011 0.0079 17.2 0.1 2 23 216 238 215 238 0.93 3 15 0.0022 0.17 13.1 0.5 1 23 268 291 268 291 0.94 4 15 0.016 1.2 10.4 8.7 1 23 379 401 379 401 0.97 5 15 2.9e-05 0.0022 19.0 0.8 3 23 409 429 407 429 0.96 6 15 0.00031 0.023 15.7 2.9 1 23 534 556 534 556 0.98 7 15 0.0036 0.27 12.4 0.5 1 22 562 583 562 583 0.95 8 15 6.9e-05 0.0052 17.8 1.2 1 23 592 615 592 615 0.97 9 15 2.9e-06 0.00021 22.1 0.9 1 23 636 658 636 658 0.98 10 15 1.8e-05 0.0014 19.6 1.3 1 23 665 687 665 687 0.98 11 15 1.4e-07 1.1e-05 26.2 2.0 3 23 700 720 698 720 0.96 12 15 2.5e-05 0.0019 19.2 3.1 1 23 726 748 726 748 0.99 13 15 1.2e-06 9.2e-05 23.3 2.2 3 23 756 776 754 776 0.97 14 15 2.4e-06 0.00018 22.4 1.7 1 23 782 804 782 804 0.99 15 15 0.0067 0.5 11.6 0.1 1 23 810 834 810 834 0.93
Sequence Information
- Coding Sequence
- ATGGCAGAGCCTGAAGATGCAATAGAAACAGAAATAAATTTACTAACAGTATGTCGTACCTGTTTAACAGAACGCGGAGAAATGAAATCCGTGTTTTTTAACGACGAAAGTATCGGAAATAACTGCTTTAACAGCATAGTTACGTCTTGTACACAACTGAGGGTTGCCGAAGGTGACGGTTTACCAGTCCACGTTTGTAAACGGTGCATTGAAAGCGTGATGATGGCTTTCGCATTCAAACAACAAGCACAAAGGGCTGATGCCACCCTTCGGGATTATATCATTAGGAAACACCCAGATATCCAATTGGGTCCAATCGCTGAAGTTAAGCAAGAGAAGACTCAGGAATGTATTGAAATTGATGTGGATGTCAAAAAAGAATTGAAGAATGCAGAATCAATGTTTGGTTCACACTCTTACGATGACAGCACTATTCTCGATCATTTTGATGATTCGGATGACTCTGAAGATGACAAAAAACCGCTCAATGCATTCAAAAAAGAAATGGAAGGAAAGAAATTGCTCAATGATTCGTCTAACTCGCAAGATATGACGGGATTGTCATGTCCTGTTTGCAATAAAGTATTCCGCACCTCTGATGCCTTAGAAGCCCATAAGCAAAAACGGCATTCAGATGGGTACGTCGAATGTGAATATTGCAATAGGAGATTTACGAAAGCCATTTATTTAGAGCGTCATATAATTGCGACGCATTCGAAAGTGTCCAAGAAGGGCAATCGATCGCACGAGAAAAGACTAAGCGCGGTGGTTAGGGAGAAGAGTCCCGAGCACACCGGACCGTTTGTCTGCAAGTTCTGCGGTTATCTGTTTCAACGGGAAGACCAGCTCGTTACGCACATTACGCTGTCGCACGACGAGAAGTGCGGTCCCAAGAAACGGGGCCGGCCCTCCAAGAAGGATATCATCGCCAAGAAACTGCGACTGAAAGGAATACTGGAAACGATGAAGATCAAAACTGAAGTAGAAGACGAGCCGGCTGAAGACTTTGACAATGATCATGACGTTTCGTTCTCAACGGATCCTAAAGGTGTCCTGGACAACCTGGCCTCTGGCCCGGTCGTCAATATTCAAATGGAGATGGGCATGGAAATATTCAGGGATAAGTCGGCCGACCATTACTGTAACATGTGCTGCAAATCGTTTGCCACCTTCGAACACCTCGAGAAACATCTTAGAAAACATATAGGAGAAAAGCCTTCAATTTGTAAAATATGCGATACAACATTTACCCGAATGAATCTATTGAAGAAACACTTACTAATTCACAACACCCCTGATTGTTTGAAAGATATTGATGTCAAATACAAATCAGTTTTGTTGACGAATCATGAAAAGGTCTTGGCGGCTACACCGGACAGTCTCACAGATGAATTCTTAACCCAAATCATTCTCGACGATATTAAGTCAGGAAAAGTAGAAAGATATATCAATGAAATCAAAATAGACCACGACGAACTGCACATTTTAAACGATGTTGAAAATGATTCTAATGACACAGGAATAGATGACGGCAATAGTGATTCGGAATTAAAAAAGAAAAAGAAAAATGGTCGACATGGTGGCCGCAAATATAAAATGCACAAATGCGCGCTGTGCGATCTGAGCTTTTCGAGAACCAATCACATCATCCGACATATGGCAACCCACAACTACGACTACCCTTACAAATGCGACACATGCAAAAAAGTATTCCCCAACGATGATATACTTCAGAAGCACAAGCGAATGCAGTGCGAGAACAACACCAAAGCATACCAATGCGGAACCTGCGATATGAAATTCACATACGAAATGTCCCTGAATAGACACATTCTTAGGTATCACAAAGGAGAGTCAGTCCTAATAAACTTCAATGATCCTATGGACCCCAAACGAGAAAAGAGTTTCATATGCCCCAAATGCAACAAAGGATTTTACAGGCAAGAAAATCTGGATAAACATGCCAAGACACATATGCCCCATGAGAAGAAGTTCGAGTGTCCCATTTGTCAGAAGAAATTCCTACGTAAAGACAATTTAAGAACGCATTCCCGAATTCACGAGCCGAAGAGAGAAGACTTGGAATCTAACTGTTTAtgcgtgtactgcggaaggtcattctccaattcatcaaatctgattgttcacatgcggcgacacactggagagaaaccatacaaatgtgatatatgccaaaaagGTTTCCCAAGATCGTCCGATTTACAATGCCACCGGAGAACCCACACAGGAGAAAAGCCCTGCCTTTGTACAATCTGCGGGAAAGgtttctcccgctcaaataagcttgtgaggcacatgcgaatccacacaggacagcggccgtacaaatgcacgttctgcgacagggcgttcacgcagtccaacgatctcacgctgcacgtcaggaggcatacaggggacaagccatacgtgtgcggaatttgtggcgatcgctttatacagGGTACAGCTCTTCAAAATCACAGACGCATGCAAGGGCATTATGAAGAAGTCAACCAACCCACACCGTTTGCTGCCAACTCGGTAAACAACCCGAGCCGAGAGAACGGAGCCAATCGGGTTGCGAGGGTGGGAAATCACTTAAAAGCAGAGCACCTTCAAGAGTATCTGCCTGAACTGAAGGGGCTGATTCCCCCTACTTTGATATGA
- Protein Sequence
- MAEPEDAIETEINLLTVCRTCLTERGEMKSVFFNDESIGNNCFNSIVTSCTQLRVAEGDGLPVHVCKRCIESVMMAFAFKQQAQRADATLRDYIIRKHPDIQLGPIAEVKQEKTQECIEIDVDVKKELKNAESMFGSHSYDDSTILDHFDDSDDSEDDKKPLNAFKKEMEGKKLLNDSSNSQDMTGLSCPVCNKVFRTSDALEAHKQKRHSDGYVECEYCNRRFTKAIYLERHIIATHSKVSKKGNRSHEKRLSAVVREKSPEHTGPFVCKFCGYLFQREDQLVTHITLSHDEKCGPKKRGRPSKKDIIAKKLRLKGILETMKIKTEVEDEPAEDFDNDHDVSFSTDPKGVLDNLASGPVVNIQMEMGMEIFRDKSADHYCNMCCKSFATFEHLEKHLRKHIGEKPSICKICDTTFTRMNLLKKHLLIHNTPDCLKDIDVKYKSVLLTNHEKVLAATPDSLTDEFLTQIILDDIKSGKVERYINEIKIDHDELHILNDVENDSNDTGIDDGNSDSELKKKKKNGRHGGRKYKMHKCALCDLSFSRTNHIIRHMATHNYDYPYKCDTCKKVFPNDDILQKHKRMQCENNTKAYQCGTCDMKFTYEMSLNRHILRYHKGESVLINFNDPMDPKREKSFICPKCNKGFYRQENLDKHAKTHMPHEKKFECPICQKKFLRKDNLRTHSRIHEPKREDLESNCLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDICQKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGQRPYKCTFCDRAFTQSNDLTLHVRRHTGDKPYVCGICGDRFIQGTALQNHRRMQGHYEEVNQPTPFAANSVNNPSRENGANRVARVGNHLKAEHLQEYLPELKGLIPPTLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00799437; iTF_00800341;
- 90% Identity
- iTF_00800341;
- 80% Identity
- -