Basic Information

Gene Symbol
snpc-4
Assembly
GCA_028554975.1
Location
JAHFWI010000003.1:2886320-2888527[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.0035 4.4 8.1 0.0 12 46 218 257 215 257 0.80
2 5 6.1e-11 7.8e-08 32.9 0.1 3 46 265 310 263 310 0.96
3 5 1.1e-10 1.4e-07 32.1 0.1 3 42 319 362 319 364 0.98
4 5 6.3e-09 8e-06 26.5 0.0 2 43 373 414 372 415 0.96
5 5 2.7e-06 0.0035 18.0 0.0 2 44 426 473 425 475 0.84

Sequence Information

Coding Sequence
ATGGAGGTTGATTGTGAATCGGATACCGAAAATGACATCGCTGAATTACAAGCGGTACTACTCCCAACCTCTTTAAATAATAGCGAAAGGCATCGTGATGATGAGCACAGTCACAATATTCAAGATCCCAACATTCAACCAACTGATATGGATAATTATAGTTATGTTAATTCTGCATTAACATTGAATAATATGCTGGATGATGCTCTTGGGCAAGTCCAATCGAGCTTAATTTCTCTTCTCTCAGAATGCAGAAACAAAATAATGACCGTTCAAAATTCTCTGAAATCAGACCAAGAAAGCAAGAAAAAAAAACATTTTTGCTCTGGGTACTATATATGTGGAATACCTTATTTTAAAGATCCTAAACTATTTTCGGCCCCTATTAATCCCGACACTATGAAGATGAATAATCTCAGCATTCTCAATTATGTAAATTTCCCGAAATCAACTGCATGGACAGCAAATGACAAAAGAAACCTAGAAGATAGAATATTAACTTTAGCCAGAGCTAGGGAAAAAGTTGATGTTAAATACAACATAAAAAAATTGGAAATTCGATTAGAAAATGCCACTGACTCAGAAATATCAGAAATTCAAAAAAAACAGTGTCACTTATTAGATTACTTGAAAAAGATTGACACTTTACCTATATTAAATTTAGTTGAATCACTAGACGATCGGAAAGAATATGACTGGGAACAAATCGCTGAAATTCCCGATTTGAATCACAATGCAAATGAATGCCGTTCAATGTGGTTGAACTTTCTTCATCCCAGTATAAACAAAGCTAGCTGGAGCCTTTCTGAACAAAAATCACTCATGAATTTGATTCTAAAATATTCTTGTCAGAACTGGGATACAATTGCTGCCGAACTTAACACCAATCGTACGGGGTATCAGTGTTATATATATTATAAAATGCACCTGAGTCATGGACCAAATCACACTATCAAGTGGAGTCCCGAAGAAGACGAATTCCTCCTTAACGTTGTTGAAACATGCCGCATCGGGGATTACATTCCATGGGCCAAAGTCGCTTTCTACATTGAAAACAGGACAAAAGAACAAATTTACAACCGATACAGTCACAGCCTGAAAGGTAGCAAGCGCGTGGGGCGCTTTACTATTGAAGAGGACACCGTATTGATGGCTGCAACTAAGCAACATGGCAAAGATTACAGTTGTATTGCAAAATTTTTACCTACTCGTTCTACCCTTCAGATACGTATGAGACTACAAATCTTACAATCTCCTCTGCCTATTCCCGGTTCAAACAACTGGACTGTGGAGGATGACAAAAAACTTCTTGATATTTTATCAAGTCCCTACTTCAAAAAGAATTCAACCGACTATTCAGAGATGTCTAAGCATTTAGTTGGAAAATCAAGAAGTTCAATACGGTCTCGTTGTAATAGATTAAATATATGGGTGAAAAAAAACCCAGATTTGTCATCAATTCCTAGACGAAAATTTACAACAAAACAGTGTTCGAATATACCAAATGTTGATTTGGAAACTGCAGTAGAATTACTTGAGAAAAGTCTAAAAAAGTCTCCTCTTCCATTCAAAAAAACAAACAAGGTACAATTGGAAGAAACATGTTCTGGTATTGATGCAAAGTTCTTAGATTATTTCAGAACTAAAGAAAATAATTCTCAGTCTATACCTACACCATCGATATCTTCAAACATTGACGTCGCTGATGTGAAATCGATTCTTTTATTGCTCCACGCAAACCTTAATAGAAATCGAGCTGAAACACAACTAGCTAGTGGAAATGATTCGCAATATAAAACAGTAATGCAAGCATTGTTGTCATGTCAAGCAAAATTACCATTAGCTCCTGTCAAAAGTGCTACCGTGAGAACATATTCCAGGAAAAAAAATATCGTCGCTTCTACAAACACTTCAAATGAAAGTATTTCAAGTTCTTCATTAAACATATGGTCAAATGGTGTAAGGATCCCTCAGCCAAATCAAATTACTCATCTTCTTCCCCCTTTTTATGGCACAGTTGCTGCTTTTCGAGAAGTGATGCTTCAAACACAAGCGAAAAGACGCATACTATACTGCGATGCTGTACATAAACTTGATTCATACACTAAATTATGGAAAGCAAGATTTGAAGCTTTATTTTTATGGCCGGCTAATATGTCCAATATCTCAGCTAATATTGCCCTTGATTTATTTAAAAATGATGAGTGA
Protein Sequence
MEVDCESDTENDIAELQAVLLPTSLNNSERHRDDEHSHNIQDPNIQPTDMDNYSYVNSALTLNNMLDDALGQVQSSLISLLSECRNKIMTVQNSLKSDQESKKKKHFCSGYYICGIPYFKDPKLFSAPINPDTMKMNNLSILNYVNFPKSTAWTANDKRNLEDRILTLARAREKVDVKYNIKKLEIRLENATDSEISEIQKKQCHLLDYLKKIDTLPILNLVESLDDRKEYDWEQIAEIPDLNHNANECRSMWLNFLHPSINKASWSLSEQKSLMNLILKYSCQNWDTIAAELNTNRTGYQCYIYYKMHLSHGPNHTIKWSPEEDEFLLNVVETCRIGDYIPWAKVAFYIENRTKEQIYNRYSHSLKGSKRVGRFTIEEDTVLMAATKQHGKDYSCIAKFLPTRSTLQIRMRLQILQSPLPIPGSNNWTVEDDKKLLDILSSPYFKKNSTDYSEMSKHLVGKSRSSIRSRCNRLNIWVKKNPDLSSIPRRKFTTKQCSNIPNVDLETAVELLEKSLKKSPLPFKKTNKVQLEETCSGIDAKFLDYFRTKENNSQSIPTPSISSNIDVADVKSILLLLHANLNRNRAETQLASGNDSQYKTVMQALLSCQAKLPLAPVKSATVRTYSRKKNIVASTNTSNESISSSSLNIWSNGVRIPQPNQITHLLPPFYGTVAAFREVMLQTQAKRRILYCDAVHKLDSYTKLWKARFEALFLWPANMSNISANIALDLFKNDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-