Basic Information

Gene Symbol
KDM5D
Assembly
GCA_028554975.1
Location
JAHFWI010000002.1:11905371-11907806[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.4e-23 2.9e-19 69.9 0.1 2 88 93 175 92 176 0.93

Sequence Information

Coding Sequence
ATGGATTTAGAATCAGTAAGCAGAAATATATACTCGTGCAAAAATGAGTTTGATTTTAATCCACCGCCCGAAGCACCCGTCTTCGAGCCTACCCTTGAAGATTTTTCCGACCCCTTGGGATACATTAATAAAATTCGCCCTATCGCGGAAAAGTCAGGAATATGCAAGATACGACCGCCTGCAGGGTGGCAGCCACCTTTCTCTCTCGACGTCGACAAGCTAACCTTCACACCGAGAATACAAAAATTGAACGAACTGGAAGCGGTGACGAGAGTAAAACTTCACTTTATGGATCAAATGAAAACTTTCTGGGAACTTCAAGGGCACTCGTTGAAAATTCCAAGTTTTGAAGGTAAAAAAATTGACCTATTCAGTTTATATCACATAGTCAAACTCGAAGGTGGATTTGAAAAGTGCACTACAAATAAAAGGTGGAGAAAAGTGTTATCATCTCTCGGTTACAACCACGGCCCGCACGCGTTGGATTTTATCAAAAGTACTTACGAGCGACTTCTTAAGCCATACTACGAGTTCTGTACTGAGAAAATTCCTCTCATGAAATCGGAAACTGCCAGTAGAGAAGCTTCGGCGAGATCGGCAACGGGAAGATATTCTTCGACGAGCGATGTTGACGAGAAAAAGCGAAAAATCGATGCAATAGAGATTGACGCCGAGTCATATGAGCCTAATTCGAAAGTTCTAAAATCTAAAACTGGATCTGATTTAAAACAGGCTGCAGATTTTGATGAAAAATGCACACGCGAATTAAGAAAACTACTATGTTACGGGGCTGGACCTAAAATGCCAGGTTGCAATGTTATACCTTCTATAAATGATGAAGATGCAACATCTAAACTGCGTACGAGGACAAAATTTGAAATAGATCCTTTGGCTATTTATTATTGTGTGATTTGTCGAAATGATAACAGAGACAGTGAATTGCTCGCATGCAATGGATGTTCAGAAACTTACCACACATTTTGCTTAAAACCCCCTTTGGGTCATGTCCCAGAGGGAGACTGGCGTTGCTTGAAATGCATTGCTGAAGAAATAAAAAAACCTGTCGAAGCCTTTGGGTTCGCTCAGGCTGAAAGGGAATACACTCTACATCAATTTGGTGAAATGGCTGATAGATTTAAGTCTGAATATTTCAATATGATGGGGCATCTGGTGCCGACTGGTACAGTAGAGAGAGAGTTTTGGAGAATAGTTTCTTCCACTGACGAAGATGTCACTGTCGAGTACGGTGCAGACCTTCATTCTATGGATCACGGATCTGGTTTTCCTACTAAATCATCTACGAATCTTTTCCCTGTCGATCAAGAGTACGTGGACTCTGGATGGAATTTGAATAACTTGCCAATTTTAGAAGGCTCAGTGCTAAGATTTATCAATAAGGATATATCTGGAATGACTGTGCCATGGATGTACGTGGGAATGTGTTTCTCAGCGTTCTGCTGGCACAATGAAGATCATTGGAGTTATTCGATCAATTATTTACATTGGGGTGATTTCAAAACGTGGTACGGCGTCCCCGGAACTAGCGCTGAATTATTGGAAAAAACTATGAAGACGGCGACACCAGAACTCTTTCAATCTCAGCCTGATCTTTTGCATCAACTCGTCACGATAATGAATCCAAATATTCTAATGGATGCCGGTGTTCCGGTGTTTAGAACCGACCAAAAAGCTGGAGAATTCGTTGTGACGTTCCCGAGGGCCTATCATACAGGTTTCAATCAGGGTTATAATTTTGCCGAAGCCGTTAATTTTGCTCCAGCAGATTGGTTACCCATAGGTCGCAACTGTATATGGCATTACAGGAATCTGAAAAGATTTTGTGTTTTTTCTCACGATGAACTCATTTGTAATATGGCTGTTGCTGGTGATACGATGGGTTTGAGTGTCATCATTCCCACTTACACCGAATTGGTGACCACTGTAGACAATGAAATAAAACAAAGGGGCGCTTTGGCGACGGTGAAAGGCGTCACCAGATCAAATCGTCACTCTTTCGACAGCGATCCCGACGACGAGAGAGTGTGTGATAAATGTAAGACAACGTGTTATATGTCGGCTTTGATCTGCGACGATTGCCCAAAAATGGTGTGTCTGGATCACGCCGCAGACCTTTGCCAGTGCCCTTCTGAAAAATTGACATTACTCTATAGTTACAATCTGGACGAATTGCATGCTATGGTGTCAAAACTTAAATTTAGACTCATGTCGTCTGACAAGTGGGTGACGGAAGTGAAAAAAGTTCTAATGCCTAACGCTACACTTTTCGGACGGTCTGATAAAATTAAACATCTAGTGGACGAGGCCAAAGACCTCAAAATACCTAAATGTAATATTTTGGAAAAACTTTTAAGCGAACTTAACAAGGTGAGTAAAAGTAATGAGGTAATTATTATAGACCTCGACGACGAGGACTAA
Protein Sequence
MDLESVSRNIYSCKNEFDFNPPPEAPVFEPTLEDFSDPLGYINKIRPIAEKSGICKIRPPAGWQPPFSLDVDKLTFTPRIQKLNELEAVTRVKLHFMDQMKTFWELQGHSLKIPSFEGKKIDLFSLYHIVKLEGGFEKCTTNKRWRKVLSSLGYNHGPHALDFIKSTYERLLKPYYEFCTEKIPLMKSETASREASARSATGRYSSTSDVDEKKRKIDAIEIDAESYEPNSKVLKSKTGSDLKQAADFDEKCTRELRKLLCYGAGPKMPGCNVIPSINDEDATSKLRTRTKFEIDPLAIYYCVICRNDNRDSELLACNGCSETYHTFCLKPPLGHVPEGDWRCLKCIAEEIKKPVEAFGFAQAEREYTLHQFGEMADRFKSEYFNMMGHLVPTGTVEREFWRIVSSTDEDVTVEYGADLHSMDHGSGFPTKSSTNLFPVDQEYVDSGWNLNNLPILEGSVLRFINKDISGMTVPWMYVGMCFSAFCWHNEDHWSYSINYLHWGDFKTWYGVPGTSAELLEKTMKTATPELFQSQPDLLHQLVTIMNPNILMDAGVPVFRTDQKAGEFVVTFPRAYHTGFNQGYNFAEAVNFAPADWLPIGRNCIWHYRNLKRFCVFSHDELICNMAVAGDTMGLSVIIPTYTELVTTVDNEIKQRGALATVKGVTRSNRHSFDSDPDDERVCDKCKTTCYMSALICDDCPKMVCLDHAADLCQCPSEKLTLLYSYNLDELHAMVSKLKFRLMSSDKWVTEVKKVLMPNATLFGRSDKIKHLVDEAKDLKIPKCNILEKLLSELNKVSKSNEVIIIDLDDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00799055; iTF_00799991;
90% Identity
iTF_00799055;
80% Identity
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