Hjap008500.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- -
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000483.1:4046215-4048724[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.7 2.6e+02 2.8 0.5 2 20 88 105 87 107 0.86 2 15 0.15 11 7.1 0.4 2 19 139 156 138 159 0.91 3 15 0.0014 0.1 13.5 2.1 1 23 163 186 163 186 0.92 4 15 2.5 1.8e+02 3.3 0.2 1 12 207 218 207 223 0.84 5 15 0.18 13 6.9 0.2 2 22 299 319 298 319 0.91 6 15 0.43 30 5.7 4.3 1 23 409 432 409 432 0.93 7 15 0.28 20 6.3 0.2 1 23 471 494 471 494 0.90 8 15 0.016 1.2 10.2 0.2 1 23 500 522 500 522 0.97 9 15 4.5 3.2e+02 2.5 0.6 2 23 529 550 528 550 0.88 10 15 0.0001 0.0074 17.1 4.7 1 23 559 582 559 583 0.92 11 15 1.7 1.2e+02 3.8 0.1 3 23 590 609 589 609 0.85 12 15 1.8e-05 0.0013 19.5 1.7 1 23 620 643 620 643 0.97 13 15 0.31 22 6.2 2.0 1 23 683 706 683 706 0.94 14 15 2.2e-05 0.0016 19.2 0.2 2 23 713 734 712 734 0.98 15 15 0.033 2.4 9.2 1.5 1 23 766 788 766 788 0.93
Sequence Information
- Coding Sequence
- ATGCCTCGCAACGAAGTTAAACAATTTACACATCTAGGAACACCAATTGGAATAACTGGATCTCAAGATGACAAAAATTTCATCTATCACAAAACCGGAGTAGTCACCAAAGAGCTGAGGATCAGCATTCAAAGGATGAACTTTCCCAGAGACCTGGACAAACACGATACTGAACTTCCAAAAGATAAACAACTTAAATCAATTTACTCTAAATCGCGTAAAAAAAGTTTGACTGAATATTCTCAGGAAAGACATTTTATTACGTGTTCTTTTTGTGGTGAGAAAGTTGTATCGAAATTATTCAAGAAACATTTAATCAAATGCAAGAAACAAATGACCTGCATTGACTGCTTCAAATGCTTCAGTGATAAATCAGTTTTTCACAATCATTGTCAAACATGTTCACCCAATTTGAACTGTACAAAATGTCTCTTAAAATTCGATGATTCATTGCAGTTGCAGAGACATAATGAAACATGCAATATATTTGCATGTGAGGAATGTTCAAAATGTTTTATTAGCTTTTCAACTCTCAGCATTCATAGGTCTGCTAAACACAATTTAAAAATTAATCATGAAGAAATAGATTTAAGCACTCAGAAAATTGACGACCGTAGTTTTGTTTGTGATAGATGTTCCGAAAGTTTTGCAAGTGACGAATTAAAAAAAGGTGATAGATTTCTTTGCGCAAAGTGTGTTTCATTCACAACTAACGATAGTATAGAAGTTATTCAGACGGGTTGGTCTGAGATGAGCATTTCAAGTGAAAAAATAGATAACGATCCATTGAATATATCTGACAATAGTTCTACTGGTGATAATGAATATGCAAACTTAGAATCAAACAAAGATCACGCCTTTTCCAAGTCCCCGATTGACACTATAATAACTGACAAATGCCCTCATTGCTCCGAAGCAGTTGTGAAGATTTTTGATTTCCAAAGCCATTTGAAGACTTGTTCTGAATTGGCAGCTTACATGAAGAAAAAAGCAAAGTTGCTAGGATCGCTTGGAAATAATCAATATTCTAATGGTTCTATTCAAGTTGACAACTGTGAAACTGTAAGTGGAAGTAAACATTCGGGAAATCAGTCAGCCAAAACAATCTTGCTAAAATCAAAACAAAATTGGTTGAACGCTTTCGAAAGATACAAGTTAGAAATTGACGATTTATTTGATAAAATATCATCAGATAGATCAATTGATTGTAAATCTAATCAAGAATTTATCTGCAAGCTCTGTCATAAAATTCAAAGGAGTCGTAGGTCATTGAACCATCATTTGGATTATGTGCACAAAATGAAGGTTTTCTTTAGTCCGCCTATGCAATATTCATGTAATTATTGCCATATAGAAAAAAGTACACTAAAAGAAATGAACACTCACTTGTATTATTGTCATGTTCTCGATTTTAAATGCCATTATTGCTCATCTGTTCTGGCTTCTAAAGCAGAAAGAATAGCACATGTTGTGTCGGCGCATCCAGAAGAAGCCGGGTACGAATGCACCATGTGTCCGTTCAAGATAAATAATGCAATTCAATTGAGACAACACACTCTATGGCATTCTAAGCAGGAAATTATCTCGTGCAATGTTTGCAGTAAGAAAGTCAAAGGAAGACTCAAATACGGCTATCATCTCAAATGGCACAAAATACGATCAGAAAATAACATGTTTCTGTGTCCTAAATGCGGGAAACGTTTCACATCTCGTTCTGGATTCCGCCAACACCATCTCAATATACATCATCCGAAAAAATTTATTCTGTGTCCGATCTGCGGGAAACTTGTTACGGAACGTTATATTGCAAATCATCAAAAACTGCATGGAAAAAACCGTAAGCAAGATGATCGACCGTATCAATGTACCGATTGCCCTCTGTCATTCAAAAGAAAACAATCACTCGCGATGCACAAAAACCGTCGACATTCCCTGCACTTGACTGTTTGTAGATTCTGTAACATAGATTTGGTTACTCACCAAGCCTACAAAGAACACAGAATCGCTTTTCACAAAAAACAAAAAATGAGAAAATCGGACAAAGGATATCACTGTCCGTTGTGTCCCAAAATTTTAAAACACGTCAGTTCTGCTCAGTTACATTTTCTTAAAAGCCACGAACCGCATCGGCACGTCAAATGTAACGTTTGCCCGAGGACATTCCCGCTAGAGTGGCAGCTTCGGAAACATATGGCTACACACGACCATTCTGAAGCCGGCTCTGAAAGTGTAATTTTTAGAGGGAAAAAATCTAAGACTACTCGTGGCACTGTCAATCAATCCAACGATAAAAACTTTTTATGCTCATATTGCCCGGCAAGTTTCAAAAGGCGGAACGCACAAATTGTTCATGAGCATAAACACACCATTCAAGGATTTAGCAATTGA
- Protein Sequence
- MPRNEVKQFTHLGTPIGITGSQDDKNFIYHKTGVVTKELRISIQRMNFPRDLDKHDTELPKDKQLKSIYSKSRKKSLTEYSQERHFITCSFCGEKVVSKLFKKHLIKCKKQMTCIDCFKCFSDKSVFHNHCQTCSPNLNCTKCLLKFDDSLQLQRHNETCNIFACEECSKCFISFSTLSIHRSAKHNLKINHEEIDLSTQKIDDRSFVCDRCSESFASDELKKGDRFLCAKCVSFTTNDSIEVIQTGWSEMSISSEKIDNDPLNISDNSSTGDNEYANLESNKDHAFSKSPIDTIITDKCPHCSEAVVKIFDFQSHLKTCSELAAYMKKKAKLLGSLGNNQYSNGSIQVDNCETVSGSKHSGNQSAKTILLKSKQNWLNAFERYKLEIDDLFDKISSDRSIDCKSNQEFICKLCHKIQRSRRSLNHHLDYVHKMKVFFSPPMQYSCNYCHIEKSTLKEMNTHLYYCHVLDFKCHYCSSVLASKAERIAHVVSAHPEEAGYECTMCPFKINNAIQLRQHTLWHSKQEIISCNVCSKKVKGRLKYGYHLKWHKIRSENNMFLCPKCGKRFTSRSGFRQHHLNIHHPKKFILCPICGKLVTERYIANHQKLHGKNRKQDDRPYQCTDCPLSFKRKQSLAMHKNRRHSLHLTVCRFCNIDLVTHQAYKEHRIAFHKKQKMRKSDKGYHCPLCPKILKHVSSAQLHFLKSHEPHRHVKCNVCPRTFPLEWQLRKHMATHDHSEAGSESVIFRGKKSKTTRGTVNQSNDKNFLCSYCPASFKRRNAQIVHEHKHTIQGFSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -