Basic Information

Insect: Himalopsyche japonica
Gene Symbol: -
Assembly: GCA_028555115.1
Location: JAHFWJ010000489.1:395478-404310[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.24 17 6.5 1.7 1 20 441 460 441 461 0.96

2 10 0.00023 0.017 16.0 0.1 1 23 469 491 469 491 0.96

3 10 0.5 36 5.5 1.8 3 23 499 521 497 521 0.90

4 10 0.0027 0.19 12.7 0.4 1 23 527 549 527 549 0.97

5 10 3.3e-05 0.0024 18.7 0.8 1 23 555 578 555 578 0.97

6 10 0.00013 0.0092 16.8 1.3 1 23 588 611 588 611 0.94

7 10 0.0042 0.3 12.1 1.6 3 23 621 641 620 641 0.98

8 10 0.0015 0.1 13.5 6.1 1 23 647 669 647 669 0.97

9 10 3.9e-06 0.00028 21.6 2.9 1 23 675 697 675 697 0.97

10 10 0.00055 0.039 14.8 0.2 1 22 703 724 703 724 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.24	17	6.5	1.7	1	20	441	460	441	461	0.96
2	10	0.00023	0.017	16.0	0.1	1	23	469	491	469	491	0.96
3	10	0.5	36	5.5	1.8	3	23	499	521	497	521	0.90
4	10	0.0027	0.19	12.7	0.4	1	23	527	549	527	549	0.97
5	10	3.3e-05	0.0024	18.7	0.8	1	23	555	578	555	578	0.97
6	10	0.00013	0.0092	16.8	1.3	1	23	588	611	588	611	0.94
7	10	0.0042	0.3	12.1	1.6	3	23	621	641	620	641	0.98
8	10	0.0015	0.1	13.5	6.1	1	23	647	669	647	669	0.97
9	10	3.9e-06	0.00028	21.6	2.9	1	23	675	697	675	697	0.97
10	10	0.00055	0.039	14.8	0.2	1	22	703	724	703	724	0.97

Sequence Information

Coding Sequence: ATGACTGAAATATGCAGGCTATGCTTAAGTAAGAACTTCGTGAACCATCCAATATTTGGCAATGAAAACAGCTTATTTTTTAAAATCGACGCTTGTTTACCGCTCAACATATCTGAATCCGATAATTTACCCAAAAAAATTTGTGATAAATGTACATTAAAAATCAACGATATACATGAATATTGCACAAATGTAGTCAACGCAGAGAATCATTTGATGTTAAGTGAATTTCAAAATAAAAACTCTAAAATAATTAACTGTGACGATAAAGCATTATTTTTATCATCCTCGCTTAATGCGAAAACACAAAGTCAACCCACTACGCCTCAAAATGACACTTCCAACTGGAGTGTCAAAAAACATAGGCCACCTATTTTACCAGAGTATACTATTTCTGTTATCAATCGTTGCATTAAGGTGGAACCCTGGGATTCTTATGATGTTGAACATGTAAATAGCGAAAGCAATAAAGATCCAGCTTTGAATAAACTATCTTCTAATGTAGTATCAAGGTTACATAGTTATTCAACAAAATGTACTCAAACGGAGTTATGCCTGTCAGATTTAATCAATGATGGTATTTCAACACAGAGCAAAGAGCTTTGTATAGATACTGATAAAGTTATCAAAGAAGAAGAAATATTCTTTGAAGAAAGTCCTGTAGAAAACGATTTTAATTTTGAAAGCGTTGACAACAATCAATACAGCTCTGATGATGATGTAACATTAAATAAAATCATCAAAGTAGTCCCTCCAATCAAAGTTAAACTGAACAAAACTCACCCTACCTGTTCGAAAGTTAAACATAAAAAATCTAAAAAGCAAAAGAAAGAATTGAAAACACCTGAAATAATTGCCAAACGATCGAGAGGCCGTCCGAAGGGTTCACTTAATAAAAAAATAGACACCAAAGATAAAGAGAAGGTTAAAGCAAAGAAACATTCTAGAAAAAGCATTTATGATGAGTGTGGGATTAAACTGGATATCAAAGTTGAAGGTATTGATGTACTGGAGAAAGATGGAAATGAAAGAGATGACGGTGATAAGTGGTTTTATCCAAAAGGTACAGCAGAAGATGATAAGAAATGGCAATGTCTAACGTGTTTTGCGTTCAAAACGTCGAGGACCGATCTACTTCAACATTATAAAGATCATGTGGATAATCCAACAAAATTCCAGCTGGACCATAATAGTATTAAATGCGAAGAAACTGTTTTAATAAAAGATGAGCCTGAAGATGGAAAAGGTGATATCGGTGTCGAAGCTAATTCACGTGATTACATAATTGTTAAAGCACCCCAATTCGGTCATGCTCCTGCCTTCCAGTGCCTCAAATGCTGTAAAATATTCATTAATAAGAAATCTGTGATGAGACATTTGGTGTGTCATGATGATTCAAGACCATTTCCGTGTAATATATGTGGACGCACCTACAAGAGAGCTTATGAAATTTTACTCCACGGTAGAGCTCATAGCGGAGTCAAGACTCTGTTTTGTCGATACGAGCAATGTAATTATAGTACTGTTTACCGAGGGGCTCTCCTTTCACATCATAAGCGACATGAACCTAATTTTAAGTACACCTGTGATGTATGCAATAAAGGATTTGATGTACTGACGTGGTTTACGGAACATAAAAATCTACATACTGGTGAGAAACCATTTGTCTGTGACATCTGTAGCAAGAGTTTTATCTATTCGAGATATCTTGCATCACACCGAAAAAGTGTTCACCCTGAAACAAGTACCCGTAAACTTCTTCACCGATGTCCGGACTGTCCGATGGAGTTTCCTCATCGGAAACAGTTACGGACTCACGCTGCGCGAGTTCACAATGCACCTCATGGTGGACGCGTGCTCtgcgacatttgcggcaaaggcctcagcagtagagaacatctcaagttccataggagaatacacacaggagaaaaacctcatgtgtgcAGAATTTGTCACAAAGGATTTGTGAAGAAATGTAATTTAACGCTCCACGAAAGAGTTCATAGTGGAGAACGACCTCATGTTTGTTCACATTGCGGAAAAGCATTCTCCCAGAGGTCAACTCTAGTCATACATGAAAGATATCATTCCGGTGCCCGTCCGTATACATGTCAAATATGCAACAAAGGCTTCGTAGCGAAAGGTTTGCTTTCCATGCACCAAAAAACTTGCCTGGCCACATCGGCATCCGTTTGA
Protein Sequence: MTEICRLCLSKNFVNHPIFGNENSLFFKIDACLPLNISESDNLPKKICDKCTLKINDIHEYCTNVVNAENHLMLSEFQNKNSKIINCDDKALFLSSSLNAKTQSQPTTPQNDTSNWSVKKHRPPILPEYTISVINRCIKVEPWDSYDVEHVNSESNKDPALNKLSSNVVSRLHSYSTKCTQTELCLSDLINDGISTQSKELCIDTDKVIKEEEIFFEESPVENDFNFESVDNNQYSSDDDVTLNKIIKVVPPIKVKLNKTHPTCSKVKHKKSKKQKKELKTPEIIAKRSRGRPKGSLNKKIDTKDKEKVKAKKHSRKSIYDECGIKLDIKVEGIDVLEKDGNERDDGDKWFYPKGTAEDDKKWQCLTCFAFKTSRTDLLQHYKDHVDNPTKFQLDHNSIKCEETVLIKDEPEDGKGDIGVEANSRDYIIVKAPQFGHAPAFQCLKCCKIFINKKSVMRHLVCHDDSRPFPCNICGRTYKRAYEILLHGRAHSGVKTLFCRYEQCNYSTVYRGALLSHHKRHEPNFKYTCDVCNKGFDVLTWFTEHKNLHTGEKPFVCDICSKSFIYSRYLASHRKSVHPETSTRKLLHRCPDCPMEFPHRKQLRTHAARVHNAPHGGRVLCDICGKGLSSREHLKFHRRIHTGEKPHVCRICHKGFVKKCNLTLHERVHSGERPHVCSHCGKAFSQRSTLVIHERYHSGARPYTCQICNKGFVAKGLLSMHQKTCLATSASV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -