Basic Information

Insect: Himalopsyche japonica
Gene Symbol: -
Assembly: GCA_028555115.1
Location: JAHFWJ010000334.1:4175310-4176284[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00047 0.034 15.0 0.6 3 23 105 126 104 126 0.92

2 7 0.0067 0.48 11.4 1.2 3 19 158 174 157 177 0.93

3 7 1.8e-05 0.0013 19.5 4.7 1 23 186 208 186 208 0.98

4 7 0.04 2.8 9.0 4.2 2 23 219 239 218 239 0.97

5 7 6.3e-07 4.5e-05 24.1 1.0 1 23 245 267 245 267 0.97

6 7 6.5e-07 4.6e-05 24.0 1.7 1 23 273 295 273 295 0.96

7 7 1.8e-07 1.3e-05 25.8 1.3 1 23 301 323 301 323 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00047	0.034	15.0	0.6	3	23	105	126	104	126	0.92
2	7	0.0067	0.48	11.4	1.2	3	19	158	174	157	177	0.93
3	7	1.8e-05	0.0013	19.5	4.7	1	23	186	208	186	208	0.98
4	7	0.04	2.8	9.0	4.2	2	23	219	239	218	239	0.97
5	7	6.3e-07	4.5e-05	24.1	1.0	1	23	245	267	245	267	0.97
6	7	6.5e-07	4.6e-05	24.0	1.7	1	23	273	295	273	295	0.96
7	7	1.8e-07	1.3e-05	25.8	1.3	1	23	301	323	301	323	0.98

Sequence Information

Coding Sequence: ATGCAGAACAACCCCCAGGAGCTTTCATGGCAGGCAATTCAGGCTATAGTGGGGGTGAAGCTTTCGGTCGACGTTCTCCGATTCGATGACATAGGTTTTCATTTGATAAAAAATGCACAGCCGAGCGTGATAGATTTAGATTCAGACATCGAAATTATCGAGGACGAGAGCGATGGCGAGCATTCTTCCGACATCAACGGCAACGGGCGGAGCAGAACCTCGGAGGGCAGCGCCACTTTGGATCACATCGAATCGAGCACAGACGAGGTGGAAAAGTCTCCCCGCGAAGATGAACCCAAAGAAAATGCCTCATGCGCATTGTGTGATATGAAATTTACTTCCAAAGGTGATCTGTCAAAGCATACGGCCAACAGTCATTTCGACGATAACGATAATTCAGTAGACAACAATCTATCGATAGACGATTATTTAGAAGTCACCCTGTCGACGGATTCCGAAAATAGTCACGGATGCGGAAAATGCGACCAAACATTTACCAACGAGGGAGACCTTTCCTCGCACAATTGCAAACCAAAGATTGCAGACGAGAAAAAACACAGCTGTCACGTGTGCACAGAAAAGTTTACGAATTATTGGGAACTCCGGAAGCATATAAATACTCATTTCCCCGGAATGCTGGATTCTAAGTCAAGTTATTGTCACTTATGCCAAAAAGATTACACTAAGACAGGTTTCATGAACCATTTAAGAAAGCACACGGGGGAGAGACCGTTTGTTTGCGAGCTCTGTAAAAAAGCTTTCTCACAGTCGAGCAGTCTCTCAATTCACATGAAGTTTCACCTGAACGTGAGAAAGCATGCGTGTACCATATGTGAAAAGAAATTTGTAACCAAAAGTGAACTCTCCCGCCATATGACCGTTCACACAAAACAGAAATCGTACTACTGCGGGGTCTGTGATAAAGCCTTCACCCGTTCGGATAATATGAAAAAACATGAAAAAACTCACGGATGA
Protein Sequence: MQNNPQELSWQAIQAIVGVKLSVDVLRFDDIGFHLIKNAQPSVIDLDSDIEIIEDESDGEHSSDINGNGRSRTSEGSATLDHIESSTDEVEKSPREDEPKENASCALCDMKFTSKGDLSKHTANSHFDDNDNSVDNNLSIDDYLEVTLSTDSENSHGCGKCDQTFTNEGDLSSHNCKPKIADEKKHSCHVCTEKFTNYWELRKHINTHFPGMLDSKSSYCHLCQKDYTKTGFMNHLRKHTGERPFVCELCKKAFSQSSSLSIHMKFHLNVRKHACTICEKKFVTKSELSRHMTVHTKQKSYYCGVCDKAFTRSDNMKKHEKTHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01012746;
90% Identity: iTF_00799551;
80% Identity: -