Hjap018160.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- -
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000412.1:750972-755506[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.3 21 6.2 1.4 1 23 152 174 152 174 0.96 2 17 0.0088 0.62 11.1 5.5 1 23 213 235 213 235 0.96 3 17 0.01 0.73 10.8 3.1 1 23 268 291 268 291 0.94 4 17 0.0011 0.079 13.9 2.0 2 23 299 320 298 320 0.97 5 17 0.0023 0.16 12.9 3.6 1 23 325 347 325 347 0.97 6 17 0.0082 0.59 11.1 0.7 1 23 353 375 353 375 0.96 7 17 4.8 3.4e+02 2.4 5.1 3 23 410 430 408 430 0.95 8 17 0.00018 0.013 16.4 1.7 1 23 436 458 436 458 0.98 9 17 0.0001 0.0073 17.1 0.6 1 23 464 486 464 486 0.98 10 17 0.0026 0.18 12.7 2.6 1 23 492 514 492 514 0.97 11 17 0.00017 0.012 16.4 2.3 1 23 520 542 520 542 0.95 12 17 0.0009 0.064 14.2 0.3 1 23 548 570 548 570 0.97 13 17 0.0059 0.42 11.6 2.0 1 23 576 598 576 598 0.97 14 17 1.7e-05 0.0012 19.6 1.1 1 23 604 626 604 626 0.97 15 17 0.062 4.4 8.4 2.9 1 23 632 654 632 654 0.97 16 17 0.011 0.76 10.8 2.6 1 23 660 682 660 682 0.97 17 17 0.00021 0.015 16.1 1.7 1 23 688 710 688 710 0.97
Sequence Information
- Coding Sequence
- ATGAATATTAAACAAGAAATACATGAAGATTCGAAGCCAATGAGGCAATATGACAATAGCTACCTTTCAAATTTACATCCTACGATAAATTCGTCAATTTTGATTAAACAAGAAATTCAAGAAGATTATTCAGATTCACTAAGTATTGGCAACGAATACGAAGCACTAAATGTAGACGTGCCAGTCAAATATGAAATATTCGAAGACGAAAAGATACCAGCTGTTAAAAATGAACTATATGAGAGTGTGGGAACATCATTTGACGCAACCTTCCAAATATATCATGAACCGGTTAGCAATTACACCAATGCACCTATCCTGCAAATAAAAAATGAAAACATTTCTAGGGAATGTAAAACTGAAGGGAGATTAGACACCGCTACATACCCTATGAATCAGGAAAGACGAGAGGTCATCATATCACTTCCAGAGATTGTTTACAACAGACGTAATTATGTATGTGGCATCTGTTATTGTGTCTTTGGGTCATTAAGAATATTAAGAAAGCATAAAAAAGGTCACAAGGATCCGTTAAAATTACCGAGGCGTCGAAACGGGAGTAAAATCACGGATGATGTTTTAGTTTCAAATGAATTAAATCAAAAAAACATGGCACAATCTGAAAGCTTGGGAATATTTGTTTGCAAGCTGTGTAAACACCGATTTAAAACATTCAGTCTTTATACGAAGCATCGTATTGACCACACTCCTGATGAATTTTTGTCATGCATTATATGTAAATACAAGACTCAGTTTCTATCCAAAATGGAGTCACATAAGATTGTTCATATTAAAAAGTCATTTCTTTGTAAAAGTTGCAAACTTCCATTTAAAAGTTGGTGCGATTTGCGAGTGCACAGATCTAAAATGCACGCAAGAAGTAAGCAAGTGCTTCGCTGTGATATATGCGATTATAAGTCTTCGCATTTAGGTAATATGACAAAGCACACTTTGACTCATGAACTCAAACCTTTCGCTTGCAATTTATGCACGTGTAAGTTTACATCTGTGAGCAGTCTCGAGAAACATAAATTACGTCATAGTGATGTAAAACCTTTTGCATGCTCACAGTGTCGGTCAAAGTTTAGAACGCCGCGGTTTTTGGAATTACACCAAGCCGTGCACGAAAATAAAGTATTGATTTGCGACGTATGCCAGTTTCAATGCGTTGAATCGTACATCATGAAAAGACATAAAAAAATTCATGCTGGCATGAAAACTCACTTGTGCGATGTGTGTTCGTACATGTGTCATTCTGCGTTCGCAATGAGACAGCATCGGCAGATTCATACTGAAGATAAAGCATTCGTTTGCGAGACGTGTAACGTTAGATTTAAAATGTTGAAAAATTTGAAATTGCATCAAATGAAGCATGACGCCAACAATCCGTTCTCTTGCGGTGAATGTTCATACAGAGGTACACAATTGAGCGATCTGAAAAAGCACCTGCGAATACATACAGGAGAAAAGCCTTATTCGTGTCAAACATGCACGTATAAATGCCGAACATCTGGTGAATTAAAAGTTCACGCTCTCAGTCACAATAGTGCTAAGCCACACGTTTGTGATGTGTGCTTTAAGGTATTTAAAACACAGAAAAGTTTAACTTTACACAAAATTTTACATAAAGATGACAATCCATTCGCTTGTGACGAATGCGATTATAGGGGCATACAATCAACTGATTTGAAAAAGCATAAAATGATACACAGCGGTGAGAAACCGTTTTCTTGCGATAAATGCGTCTATAAATGCCGAACGTCCGGTGAACTAAGAAGCCACGCTTCAGTTCACGTCACCATCAAAGCGTTTGAATGCGAAACATGTTCTCGTGCATTTAAAACCCAGAAAAGCTTGAACTCACACCAAATTTTACACGACGCTGACAATCCGTACGCTTGTGACGAGTGTTCGTACAAAGGACAACACGCGACTCATTTAAAAAATCACAAAATGGTTCATACTGGTGAAAAGCCTCATTCGTGTCAAGTGTGCGCGTACAAATGCCGTACTTCAGGTGAATTAAAAGTTCACGTGCTCAGTCATAATACCGCTAAACCATACAATTGTGATTTGTGCTATAAGGCATTTAAGACCCGTAAAACTTTAAGTTCGCACCAAATTTTACATAACAATGATATTTCAGGGACAATGCAATAA
- Protein Sequence
- MNIKQEIHEDSKPMRQYDNSYLSNLHPTINSSILIKQEIQEDYSDSLSIGNEYEALNVDVPVKYEIFEDEKIPAVKNELYESVGTSFDATFQIYHEPVSNYTNAPILQIKNENISRECKTEGRLDTATYPMNQERREVIISLPEIVYNRRNYVCGICYCVFGSLRILRKHKKGHKDPLKLPRRRNGSKITDDVLVSNELNQKNMAQSESLGIFVCKLCKHRFKTFSLYTKHRIDHTPDEFLSCIICKYKTQFLSKMESHKIVHIKKSFLCKSCKLPFKSWCDLRVHRSKMHARSKQVLRCDICDYKSSHLGNMTKHTLTHELKPFACNLCTCKFTSVSSLEKHKLRHSDVKPFACSQCRSKFRTPRFLELHQAVHENKVLICDVCQFQCVESYIMKRHKKIHAGMKTHLCDVCSYMCHSAFAMRQHRQIHTEDKAFVCETCNVRFKMLKNLKLHQMKHDANNPFSCGECSYRGTQLSDLKKHLRIHTGEKPYSCQTCTYKCRTSGELKVHALSHNSAKPHVCDVCFKVFKTQKSLTLHKILHKDDNPFACDECDYRGIQSTDLKKHKMIHSGEKPFSCDKCVYKCRTSGELRSHASVHVTIKAFECETCSRAFKTQKSLNSHQILHDADNPYACDECSYKGQHATHLKNHKMVHTGEKPHSCQVCAYKCRTSGELKVHVLSHNTAKPYNCDLCYKAFKTRKTLSSHQILHNNDISGTMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -