Basic Information

Insect: Himalopsyche japonica
Gene Symbol: ffmA
Assembly: GCA_028555115.1
Location: JAHFWJ010000483.1:4019264-4033684[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00097 0.069 14.1 2.4 1 23 262 285 262 285 0.96

2 18 2.3e-07 1.6e-05 25.5 2.0 1 23 290 312 290 312 0.98

3 18 6.7e-06 0.00048 20.9 1.3 2 23 352 373 351 373 0.96

4 18 2.6e-05 0.0019 19.0 2.0 2 23 514 536 513 536 0.95

5 18 1.3e-05 0.00092 20.0 0.5 1 23 541 563 541 563 0.98

6 18 1.7 1.2e+02 3.9 5.1 1 16 569 584 569 591 0.77

7 18 0.073 5.2 8.2 5.8 1 23 600 622 600 622 0.95

8 18 0.0036 0.26 12.3 2.9 1 22 628 649 628 649 0.96

9 18 1.5e-05 0.0011 19.8 0.6 2 23 739 761 738 761 0.96

10 18 7.8 5.6e+02 1.8 1.0 3 23 857 876 856 876 0.91

11 18 1.2e-06 8.8e-05 23.2 0.6 2 23 884 906 884 906 0.96

12 18 0.0017 0.12 13.3 2.5 1 23 911 933 911 933 0.98

13 18 0.0073 0.52 11.3 6.7 1 23 939 961 939 961 0.95

14 18 0.00026 0.019 15.9 6.6 1 23 975 997 975 997 0.96

15 18 0.075 5.4 8.1 1.0 1 14 1003 1016 1003 1020 0.85

16 18 0.0004 0.028 15.3 4.5 1 23 1082 1104 1082 1104 0.98

17 18 0.0036 0.25 12.3 3.3 3 23 1115 1135 1113 1135 0.95

18 18 0.0023 0.16 12.9 1.5 1 23 1141 1164 1141 1164 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00097	0.069	14.1	2.4	1	23	262	285	262	285	0.96
2	18	2.3e-07	1.6e-05	25.5	2.0	1	23	290	312	290	312	0.98
3	18	6.7e-06	0.00048	20.9	1.3	2	23	352	373	351	373	0.96
4	18	2.6e-05	0.0019	19.0	2.0	2	23	514	536	513	536	0.95
5	18	1.3e-05	0.00092	20.0	0.5	1	23	541	563	541	563	0.98
6	18	1.7	1.2e+02	3.9	5.1	1	16	569	584	569	591	0.77
7	18	0.073	5.2	8.2	5.8	1	23	600	622	600	622	0.95
8	18	0.0036	0.26	12.3	2.9	1	22	628	649	628	649	0.96
9	18	1.5e-05	0.0011	19.8	0.6	2	23	739	761	738	761	0.96
10	18	7.8	5.6e+02	1.8	1.0	3	23	857	876	856	876	0.91
11	18	1.2e-06	8.8e-05	23.2	0.6	2	23	884	906	884	906	0.96
12	18	0.0017	0.12	13.3	2.5	1	23	911	933	911	933	0.98
13	18	0.0073	0.52	11.3	6.7	1	23	939	961	939	961	0.95
14	18	0.00026	0.019	15.9	6.6	1	23	975	997	975	997	0.96
15	18	0.075	5.4	8.1	1.0	1	14	1003	1016	1003	1020	0.85
16	18	0.0004	0.028	15.3	4.5	1	23	1082	1104	1082	1104	0.98
17	18	0.0036	0.25	12.3	3.3	3	23	1115	1135	1113	1135	0.95
18	18	0.0023	0.16	12.9	1.5	1	23	1141	1164	1141	1164	0.96

Sequence Information

Coding Sequence: ATGGATACCCAAGCCGCTAGTTCATCGCATTTTATCAATTTCGAAAATGATGTTTCCCACAATGAAAACCATACCGATGCCGCTATTTTCAATGAAGTCGAGAAAATGGATCCGACAATTCTATGTCGGATCTGTGCGACGGCCAGTACAACTGCTATACCAATATATACAGGCGAAGGACTAGATATCAATTTATCTGAAAAAATTAATAATTATTTACCCATCACGGTTGATGAGGGTGATTACCTTCCAGATAAGGTTTGCTCAGTGTGTATGAATACTTTGATAGCATGGGATGAATTGGTGCGATGTTGTATCAAATCCAATACTGCACTCACAGAAATGCTTGATAAAGGGGATGATATAAATCTCTTCAAAATGAAACCCGTTAAGTCAAAACACGTAGAGAATGGAAAATCAAAAAATAGAGATAGAAAATCAACACGTAAACGGAAAACATCCCGATATTCCGGACTCAAGAAATGTTTGAAGGCTTGCGATATTTTGGATGACGAGCTGCACTCCATCGACATCAAGAAAGATCCCAGCGATCTGGACGACGATATGAATGAACCGATGGACACGTATGACTCTAGCGATGATAATGAACTGTTGAGTAAACTCAAACCTAGAAAATATGTTGAGTTCAACAGCTTCGAAGAAAACAGTAAAAGTGAAATTGAAAACGACAGAAATCAAAATGTCCTGTGCCATCTTTGCAGAATGCAAATACTCGCCAAGAATTATATAAGCCATATACGCAATCACATAGACGAGAAACTGTTCACGTGCGAACAGTGCGGTAAAAGTTTCAAATGCGCTCAAAATATCCAGCGGCACGTCCGACAGGTGCACGAGAAATTCCGTTACCCTTGCGAGATGTGCGAGAAGACCTTCCGAACAAACAGCCACCTGCAGGAGCACATCAAGATGCATTCCAAGAACGGATACTGTCCGTACGTCTGCGACACTTGCGGCAAAGTCTACACGTGCCACGATAGATTCTCCCAACATTGCAAACGGCACGCCAAGTTAAAATACAACGCTGAACTCACCTGTCCCCATTGCCCGAAGACTTTCATCCATAAAGCGTATCTCGATCGCCATATAATTATTCACAGCAGTGAAAGACCAAAATCAACATTAAAACGTAATCCAGCAAATCGATTTTCTGAACTCAAAACTTTTCTCGGTGCCGATTCGAGCGCGAGTGAAGATAACACAATCTTAAGAAACAGCACACATGATTATTCCAGTGACGATTCTCAACCGATCAGTTCGCTAGTGTCCAAAGTGAACAAATTGACAAATCACGGATCAAAAATATTCTATGAATCTCAATATTCTGATATTGAAAGTAGTGGTGATGAATTTAAATGTAACTTTTTCAGTGATAGTGAATCTGCGAGCGACAATTCTGATAGACGAATCAAAAATGATCAAAATAAAGAAGTATTCTGTCACTTTTGCCGGAAAGACGTGATCGCCAAGTTCTATATCAAACATTTACAGAATCATCTCAATGAAAGCCATCGGAGTACTTGTGAAAAGTGTGGCAAGAGTTTTTCAAATGTGCGGAATTATAATAGACACGTGAAGCAGTTCCACGAAAGAGTGCGTTACCCTTGTGACGGTTGCAGCAAAACGTTTATCACAAATTTCGCTCTCAAAGAACACAGACGTCTGCATGAAGGCCTTCGTCCCTTTATTTGCCATTCCTGCGGGAAATCTTTCAATACCGTGAACGGGTACACGTTTCACTGCAGACGGCATGCTTTGTTAAAGTTTAAACCTGAACACGTGTGTCCGCACTGTCCAAAGCGGTTTTTGCACAAAATACACCTCGATCGACACAGCATTGTGCACAGCGACGAACGACCATTTCCTTGTTCCCTATGCAAGAGGAAGTTTAAGACGCCACGCTGCGTTAAGTCACACATGCAAACCGACGAACAAGGAAATACGGCTGTCGAAAATGATTGTTCCAGTGATGATTGTCTAGCGAGCGGTTCAATTGTACCGCTGTGCGAAGAATACAGTAGTGACAGCGACGGTGAGTTCCATCGAGGATATTTCGATACGGACCCATCCAGCGACGAAGAAGTTAACAATGACCGTAACCGTGAAATCTTTTGTCGGATTTGCAATACGAAAATTATCGCTAGGACTTTGATAAGTCACATAAAAAAGCATCTGAGTGATAAACAGCAAAGCACTTGCGAGCAGTGCGGTAAAGGATTCACTTTCGAAGTgaacctcagcaggcacatgaagcaggtgcacgagaaAAAATCATCTGTCAAACTGAGTTCAGAACTGGCAAATCTTGGAGTTAAACATCATCAAGAAAACGGTAGAATAGAACTCGATAGAAAAATTAGTCAAAAAGTTTTAGCTGTAGAAGAAAATGATAAAATCTGTAATGATTACAATGAGAATAGAAAACATTTGGTCACTGATGATTCTAGTGATAGTGAATTCCATCAAAATTATTTCTGTACAAGTGAAACATCATCAGAAGAACGATTTCACAGTGAAATCGAATTTGATCGAAACGAGGATGTGTTTTGTCGCTTATGCAAACGGAACGTCGTCGCTAGAAATTATATTAAACATATAAAGAATCACCTTCATGAaagtcggcaaaacacttgcgaagaatgcggcaaaaattttgcgaaTCCTGAAAACCTCCAAAGACACAAGAGGCAGTCTCATGAGAAAATACGATATCCTTGTGACACTTGCGATAAAATGTTTGTTTCCAATTATGCGTGTCAAGAACACAGAAGAAAACACGATGGCGTTTCTCCATACATGTGCCACTCTTGCGGGAAGCAATTCAGGCAAAGAAGCAATTATGTTATTCATTGCAAACGTCACGCATCGAATAGCAAGATGAATCTCAGATTTGACTCGGAACACGAGTGTCACCACTGCGCTAAAAAGTTTGCGCACAGGAGCGCACTCAAACGACATATTGTTGTGCACAGTGACGATCGGCCATATTCTTGTCCAACATGCCAAAAGACTTTCAAAAAGTTACCCAATAGAAGAAAACAATTGAAAAACGATTCCGACAATAATAAATCGTTCAAATTACCTGAGACGCAGAATGGAATGCAGTCAGAATATATCAATGATCCAGTAGAAAACGACTACTCTAGTGATGATTCTGTAGCAATCAGCACGCTCATGCTTAAGGAGCATAAAAGATTGCACATCAAAAACGGCTATCGTCCCTACATGTGTCACGCGTGCGGGAAATCTTACAACACTCAGAACAGCTTTCGCGAACACCGTAAAAGACACGCCCGAATGAAATTCAAGCCGGAGCATCTGTGTCCTCATTGCCCGAAGACTTTTCTTCACAAGGCTTACCTCGATCGTCACATAATCATTCACACCAACGATAGACCGTTTGCTTGTTTATTGTGCCAGAGGAAATTTAAGTCACCGCGTTTTGTCAAAGCCCATATACGAAAAAAACACACTGTCAAACAATCAAAGTGA
Protein Sequence: MDTQAASSSHFINFENDVSHNENHTDAAIFNEVEKMDPTILCRICATASTTAIPIYTGEGLDINLSEKINNYLPITVDEGDYLPDKVCSVCMNTLIAWDELVRCCIKSNTALTEMLDKGDDINLFKMKPVKSKHVENGKSKNRDRKSTRKRKTSRYSGLKKCLKACDILDDELHSIDIKKDPSDLDDDMNEPMDTYDSSDDNELLSKLKPRKYVEFNSFEENSKSEIENDRNQNVLCHLCRMQILAKNYISHIRNHIDEKLFTCEQCGKSFKCAQNIQRHVRQVHEKFRYPCEMCEKTFRTNSHLQEHIKMHSKNGYCPYVCDTCGKVYTCHDRFSQHCKRHAKLKYNAELTCPHCPKTFIHKAYLDRHIIIHSSERPKSTLKRNPANRFSELKTFLGADSSASEDNTILRNSTHDYSSDDSQPISSLVSKVNKLTNHGSKIFYESQYSDIESSGDEFKCNFFSDSESASDNSDRRIKNDQNKEVFCHFCRKDVIAKFYIKHLQNHLNESHRSTCEKCGKSFSNVRNYNRHVKQFHERVRYPCDGCSKTFITNFALKEHRRLHEGLRPFICHSCGKSFNTVNGYTFHCRRHALLKFKPEHVCPHCPKRFLHKIHLDRHSIVHSDERPFPCSLCKRKFKTPRCVKSHMQTDEQGNTAVENDCSSDDCLASGSIVPLCEEYSSDSDGEFHRGYFDTDPSSDEEVNNDRNREIFCRICNTKIIARTLISHIKKHLSDKQQSTCEQCGKGFTFEVNLSRHMKQVHEKKSSVKLSSELANLGVKHHQENGRIELDRKISQKVLAVEENDKICNDYNENRKHLVTDDSSDSEFHQNYFCTSETSSEERFHSEIEFDRNEDVFCRLCKRNVVARNYIKHIKNHLHESRQNTCEECGKNFANPENLQRHKRQSHEKIRYPCDTCDKMFVSNYACQEHRRKHDGVSPYMCHSCGKQFRQRSNYVIHCKRHASNSKMNLRFDSEHECHHCAKKFAHRSALKRHIVVHSDDRPYSCPTCQKTFKKLPNRRKQLKNDSDNNKSFKLPETQNGMQSEYINDPVENDYSSDDSVAISTLMLKEHKRLHIKNGYRPYMCHACGKSYNTQNSFREHRKRHARMKFKPEHLCPHCPKTFLHKAYLDRHIIIHTNDRPFACLLCQRKFKSPRFVKAHIRKKHTVKQSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -