Hjap006621.2
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- -
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000290.1:38825-44298[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1 73 4.5 0.6 1 23 167 189 167 189 0.96 2 11 2.1e-07 1.5e-05 25.6 1.2 1 23 196 218 196 218 0.98 3 11 3.3e-05 0.0023 18.7 0.6 1 23 222 245 222 245 0.97 4 11 0.00018 0.013 16.4 1.5 2 23 253 274 252 274 0.97 5 11 0.00095 0.068 14.1 2.4 1 23 280 302 280 302 0.98 6 11 2.8e-05 0.002 18.9 1.3 1 23 308 330 308 330 0.98 7 11 0.0014 0.1 13.5 0.5 1 22 338 359 338 363 0.93 8 11 0.0013 0.091 13.7 0.3 1 23 371 394 371 394 0.93 9 11 0.001 0.074 14.0 0.1 1 23 400 423 400 423 0.94 10 11 6.6e-07 4.7e-05 24.0 0.8 1 23 432 454 432 454 0.97 11 11 0.00085 0.061 14.2 0.7 1 23 460 483 460 483 0.96
Sequence Information
- Coding Sequence
- ATGAAAAAGCCAAGATTATACTCAAGTGACATTTCAATCAATGAATTTTATTTAAATACTTCTACCAGTGATGATGATCATGTGGTGGATGTCAAATTCTTTGGATGTGCTTTAAGAAGAGAAGATTTTGCTGAAAAACTTGTCAAAGTGGAAGATATTAAAATTGAGTCGATAAACAAAATTACTTCAAATGCAGAAACATCCTATAAAGAAGATTTCTGTATCAAAACAGAGCCTGATGAATGTCAATTTGATGAAAGTGATAATGAACCTGTTGCTAAAAAAATAGTTACCCTTGGAAAAAAGGTGAAATTGTCCGGGGAAAGAAAGAAAATAATTAAAAATGGCCGTGTATTGAAAATGAAGAGACCCATTACATCTGACACTCCCGCAAATAACTTTGATTCAACGTTAATGACAATTACTTCCCTCAGTTTTGAAGAACAGTTGCTAGAGCTGGAAGCGTCAAGACTTGCGGATGAATACATCAAAGCCCCGTATAAATGTGATCCCTGCGCCAGAGGATTTACTCACGAAATTGTTTATAAGGACCATATTGTCAAGCATGAATTGGTATCCGGTCAGTTTGTTTGCGAAATATGCGGACAGAGGTTCAACTCGCAACGAAATCTCACCAATCACCGGAATACGCATGCCACTCGGTTCACTTGCAAACTCTGCGGAAAAGTTGTCATCAGCAAACAAAACATGATGTCTCACATGTACACTGAACACGATCAGACCGAAAAAAGCATCAAATGTGACGTCTGTTTAAAGACATACAAAAACAAATTCACCTACGTTAAGCATTTGCGAATTCACAACAACTCCAAAGAGTACAAGTGTCACCTGTGTCCGAAAGTATTCCTCTGGAAAGACAATCTCAACCGTCACCTGACTCGGCACAAAAGCGAGAGATGCTTTACCTGTGACCAGTGTCCCAAGTCTTTCTTTTTGAAAGAAAACCTCAAAGAGCATCGCTCTGTACACAGCGGATCTATCGGGAAACGATTTTACTGCGTAGAATGTGACCTCTCGTACGCGACGCAAATTAAATTAAACCAACATCTCAAGAGAGGAACACGTCATCTGAGGCCAGAGCAACTTACATTCAGGTGCACATTGTGTGATGCCCGCTACACTAATAGTCTACAGCTTTCCATGCACATGGATGGAGTACATTTGAATAAACGATCTCACGCTTGTGCGCTCTGTGATGCAGCTTTTATAAGTAAAAGGACCCTTTTAACCCATATTCGTGCAGTACACCAAGGATACAGAAAGCCCCGTGACCATATTTGTGAAACTTGTGGCAAAAGCTTTGCGGATAAACAAGTGCTGAAAGCTCACATAAGGACACATACTGGCGAAAAACCTTATTCCTGTAAATATTGCGGAGTCCAGTTCGCCCACTCAGGTGCTATGTACACGCACGTTAAGCTGGTCCACCTCAAGCTGAAAAGAAATAATGACCCCGGCAAAACTAAACAAAATAAATTGAAAGTGAAAAATATTTGTATAGAGTCTACCAATTTGACTGAGACAGAAAAGGCAAAAGAAATCAACATTAATTTGTCATAA
- Protein Sequence
- MKKPRLYSSDISINEFYLNTSTSDDDHVVDVKFFGCALRREDFAEKLVKVEDIKIESINKITSNAETSYKEDFCIKTEPDECQFDESDNEPVAKKIVTLGKKVKLSGERKKIIKNGRVLKMKRPITSDTPANNFDSTLMTITSLSFEEQLLELEASRLADEYIKAPYKCDPCARGFTHEIVYKDHIVKHELVSGQFVCEICGQRFNSQRNLTNHRNTHATRFTCKLCGKVVISKQNMMSHMYTEHDQTEKSIKCDVCLKTYKNKFTYVKHLRIHNNSKEYKCHLCPKVFLWKDNLNRHLTRHKSERCFTCDQCPKSFFLKENLKEHRSVHSGSIGKRFYCVECDLSYATQIKLNQHLKRGTRHLRPEQLTFRCTLCDARYTNSLQLSMHMDGVHLNKRSHACALCDAAFISKRTLLTHIRAVHQGYRKPRDHICETCGKSFADKQVLKAHIRTHTGEKPYSCKYCGVQFAHSGAMYTHVKLVHLKLKRNNDPGKTKQNKLKVKNICIESTNLTETEKAKEININLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00801152;
- 90% Identity
- -
- 80% Identity
- -