Hjap017178.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- Znf296
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000549.1:2674011-2687217[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.002 0.15 13.0 2.1 2 23 190 212 189 212 0.92 2 13 0.48 34 5.6 4.5 1 23 294 316 294 316 0.97 3 13 0.00022 0.016 16.1 0.4 3 23 324 344 322 344 0.96 4 13 0.00011 0.0077 17.1 3.3 1 23 449 471 449 471 0.98 5 13 0.0051 0.36 11.8 0.2 1 21 477 497 477 498 0.93 6 13 0.00028 0.02 15.8 2.6 1 23 507 529 507 530 0.96 7 13 6.1e-05 0.0043 17.8 3.0 1 23 551 573 551 573 0.97 8 13 3.6e-07 2.6e-05 24.9 1.4 1 23 580 602 580 602 0.98 9 13 1.2e-07 8.5e-06 26.4 2.0 3 23 615 635 613 635 0.96 10 13 1.9e-05 0.0013 19.4 2.5 1 23 641 663 641 663 0.99 11 13 1e-06 7.3e-05 23.4 2.2 3 23 671 691 669 691 0.97 12 13 7e-06 0.0005 20.8 1.6 1 23 697 719 697 719 0.99 13 13 0.01 0.72 10.9 0.0 1 23 725 749 725 749 0.93
Sequence Information
- Coding Sequence
- ATGGCACTGAAAGAGGATGCTTTTGAAAAAGAAATTGATTTAGAGAAAATCTGTCGTACTTGTCTACAAGAGACTGATAATATGAAATCAGTATTTTTCAATGATGACAGTTTTGGAAAGCGTTGTTTCAGTAATATTGTTACATCTTGTACTCAATTAAAGGTGACCGAAGGAGATGGATTGCCTGTTCATATATGTATTCATTGCATAAAAACTGTGACAATAGCATTTTCTTTCAAACAGCAAGCGGAAAGGGCTGATGCTAAATTGAGAGATTACATAATTAGAAAACATCCAAATATAAATCTAAGTCCGACTGCACATATAAAGGAAGAGAATGGAGATATCTTAGTAAAAACAGAACTGAAAAATGGAGACGCTAATTATGACTTGGATTCAATGGAAAGCTCTGAATTTTTTACTGACAATGCCCCACCTATTGATCACTATGATGATTCAGATGATGATGTTAAACCATTGACAGCTCATTCAAAGGGTGCCACAAAAACTGTACCTATACACGATAAGAAAGGAAGCGAAAGAAGTTCTGACAGCAGCCGACCTTGTGTATGTAAATTTTGTGAGTTCACATTCAAACGAGAGGAACAGTTGATTGCACATTTGACTTTGACACACGGCGAAAATAGCTTGCCTAAAAAGAGAGGCCGGCCATCCAAAAAAGATATCTTGGCTAAGAAGCTTAGATTGAAAAGTATTTTAGAAACGATGAAAATCAAAACAGAAAATGACGACAGTTGCAATGAAAACAACAGAGTGTCTAGCAACCCTAAAGAAATTCTGTCTGAACTAGCTGTTGAACCAGTTGTTAATATTGAAGTAGAACTCGGCGTAGAGATATACCGAGAAAAATCTTGTGACCATTATTGCAATATTTGCTGCAAAACATTTGAGACGTTTGAAATTCTTGAAAAACACCTCAAAGTGCATGAAGGAGAGAGACCATCAATTTGTAGAATATGTGATAAAACTTTTACAAAGATTGTTGTTTTAAAGAAGCACATTCAAATTCATGACACACCAGAAAACTTAACAAACCTAGATTTAATACAAAAGACTACATTACTTGCAGACCATAAGAAGGTTTTAGATGCAGAACCAGAATCTCTAACAAATGAATATTTGACTGATGTAATAATTAAAGATATTCAAGCCGGTGACATCGAGAGATATGTAAATGAAATGAAAGTCGACTGCGAAGATATCAATGATGATTTTGATTTCAACGATGCCATAATAGATAACGATGACAGTGATTCACAAATCAAAAGGGCAATGCTGCACAAATCTAAGAAGAGCCCATACAAAAAGCGTAAATATAAAATGCACAAATGCTCACTTTGTCCTGAAACATTTTCAAGAACGAATCACATCATCCGACACATGGCGACTCATGATTATGACTATCCATTCAAATGTGAAATTTGTACTAAGGTATTCCCTAATGATGAGATACTTCAGAAACACAAACGTCTACAATGTGAAAACTCCTCCAAGCCTTACCAATGTGGCACATGCGAGATGAAGTTCACTTATGAGATGTCACTCAACAAACATATCCTCAGACACCACAAAGGAGAATCCGTCTCTGTCAATTTCATTGATCCGATGTTCCAGAAGAAAGAGAAGACCTTTGTATGTTCGAATTGCAACAAAGCATTTTACAGGCAAGAACATTTAGATAAACATTCCAAAATTCATATGCCTCATGAAAAGAAGTTTGAGTGTCCTGTATGCCAGAAAAAATTTAACCGTAAGGATAATTTAAGATCACACTCCCGAGTTCATGAGCCCAATAAAGAAGAGTTGGATTCAAACTGCTTgtgtgtatactgcggccggtcattttctaattcatctaatttaatagtccatatgcgccgccatactggggagaaaccatataaatgtgacatttgtgagaaaggttttcccagaTCATCAGatcttcaatgccatcgtaggacacatactggagaaaaaccatgcctatgtacaatttgtggaaaaggtttttctcgttccaataaattggtacggcatatgcggatacatactggccagcgtccttacaaatgcaccttctgtgaaagagcattcacacagtcaaatgacttgacattgcacgtaaggagacacactggagataagccgtatgtctgcggagtatgtggggatcgcttcatacAGGGTACAGCACTTCAAGCTCACAGACGGATGCAAGGTCATTATGAGGAGTCCAAGTTACCAACACCATTCGCCGCCAATTCAGTGAACAATCCGAGTAGAGAAAATGGACCGCACCGAGTAGCAAGAGTGGGAAATGCTTTGAAGACAGAGAGTGTTGCAACATCAAACTCTGTTGAAACAAATGAGGCAAAAACCTCCGTCATCTCGACAACCAGCACTACGGAATCAGGGACTTTACGTAAGTTTATCATTAAATAA
- Protein Sequence
- MALKEDAFEKEIDLEKICRTCLQETDNMKSVFFNDDSFGKRCFSNIVTSCTQLKVTEGDGLPVHICIHCIKTVTIAFSFKQQAERADAKLRDYIIRKHPNINLSPTAHIKEENGDILVKTELKNGDANYDLDSMESSEFFTDNAPPIDHYDDSDDDVKPLTAHSKGATKTVPIHDKKGSERSSDSSRPCVCKFCEFTFKREEQLIAHLTLTHGENSLPKKRGRPSKKDILAKKLRLKSILETMKIKTENDDSCNENNRVSSNPKEILSELAVEPVVNIEVELGVEIYREKSCDHYCNICCKTFETFEILEKHLKVHEGERPSICRICDKTFTKIVVLKKHIQIHDTPENLTNLDLIQKTTLLADHKKVLDAEPESLTNEYLTDVIIKDIQAGDIERYVNEMKVDCEDINDDFDFNDAIIDNDDSDSQIKRAMLHKSKKSPYKKRKYKMHKCSLCPETFSRTNHIIRHMATHDYDYPFKCEICTKVFPNDEILQKHKRLQCENSSKPYQCGTCEMKFTYEMSLNKHILRHHKGESVSVNFIDPMFQKKEKTFVCSNCNKAFYRQEHLDKHSKIHMPHEKKFECPVCQKKFNRKDNLRSHSRVHEPNKEELDSNCLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDICEKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGQRPYKCTFCERAFTQSNDLTLHVRRHTGDKPYVCGVCGDRFIQGTALQAHRRMQGHYEESKLPTPFAANSVNNPSRENGPHRVARVGNALKTESVATSNSVETNEAKTSVISTTSTTESGTLRKFIIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00801130;
- 90% Identity
- -
- 80% Identity
- -