Hjap008361.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- -
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000483.1:1758854-1773638[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00024 0.017 16.0 6.6 1 23 215 237 215 237 0.96 2 13 4.8e-06 0.00034 21.3 1.8 3 23 251 271 250 271 0.98 3 13 0.04 2.8 9.0 5.0 2 23 280 301 280 301 0.98 4 13 1.3e-06 9.4e-05 23.1 0.4 1 23 307 329 307 329 0.97 5 13 0.00031 0.022 15.6 1.4 3 23 337 357 335 357 0.91 6 13 3.8e-06 0.00027 21.6 5.7 2 23 364 385 363 385 0.97 7 13 6.2e-05 0.0044 17.8 0.8 1 23 391 413 391 413 0.98 8 13 1.1e-06 7.5e-05 23.4 2.9 1 23 419 441 419 441 0.99 9 13 4.6e-05 0.0032 18.2 0.6 1 23 447 469 447 469 0.98 10 13 2.4e-05 0.0017 19.1 2.3 1 23 475 497 475 497 0.98 11 13 1.1e-05 0.00081 20.1 1.9 1 23 503 525 503 525 0.98 12 13 0.0024 0.17 12.8 0.6 1 23 531 553 531 553 0.95 13 13 9e-06 0.00064 20.5 0.4 1 23 587 609 587 609 0.97
Sequence Information
- Coding Sequence
- ATGGCTACTCCCAATGAATTGCAGCTCGACAAGATATGTAGAGCTTGTTTATTGATAAAAAAGGACATGAGGCCGCTCTTTGGTGAATTGATAGCCGATATGCTTATGTCCTGTGCGTCAGTGCGGGTCAATGAAAGCGATGGCTTACCTCCACAGCTCTGCCTGCAGTGTGTTCATCAAGTGTCACGATCGTACGCGTTCAAGCAGCAAGTGGAAAAGTCTGATAGCATTTTACAGGCCTATGTCAACGACTGTCCGCAGAGGCAGGAACTTATCAAGCATCAACATCCGCCAGATACCGAAATCAGCATGCAGGATATGGTCACCGACAATGAAGTCCAATTTACATACATTGACAATTCTCATTCGCAAGGATCGAGAGATTCAACCGATTCGGGTCCAGTCATGGAAGCATTCTACATCACAACATCTAACCATTCGGCCGATGCTAACAGTGCAACTCCGCAAATACAGGAAAATACGCTTAAGGTAGAAGACAAAGATTCTTCTAAAAGCAGCGAAAAAAACCTGGACGATGATGTGTGCACTGTCAAAGAGCAGCCACCCAGCGACGCGGAAGAAGATGACAGCTATTTGGAACTGGCCACATTCCAAGCGTCCGCTTCAGTCACTCCCGGTCGTCATATTTGCAATCTGTGCCACCGAGAGTTCAAACACGCCAAATGGCTCAAGACTCACATGCGTTTGCACAGTAATTGGATAAAGGCAAACTGTAAGAAGCCGCCGATGTGTACCATTTGCCACCGCTCGTTCAAAGGGCCCGGAATGTTAAAACTGCACATGCGCACTCACGAGGAGAGGCCGCAGCGCCAGCCCACCTGCACCATCTGCCACCGCCTCTTCAAGACCAAAACTATCCTCTATCGACATCGCCAGACCCACTTTGAGCAAAAGACTCATCCATGCACGATCTGCGACAAAAGCTTCATCAGCAACTACGCCCTTCAAGCGCATCTGGCGAGGCACCGCGGTGAGAAGCCTCACGCTTGCATCACGTGCGGCAAGACTTTCTACAACACCACCGATCTTAAGGTCCACATTCGCTTGCACACCGGAGAGAAGCCTCTGACGTGCGGAGACTGCGGGAAAACTTTCCGCCGCCACTCAACCCTCTGCCAGCATATTAAGAAGCACCGAGGCATCCGGGATCATGTCTGCTCCGTCTGTTCGAAAGCGTTCTTTGAAGTCTCGAAGCTGACGGCCCACATGAGAGTTCACACGGGAGAGAAGCCATACGAGTGTTCATACTGCTCGCGTTGCTTTGCTCAACAATCGGCGTTGATTTACCATCAGAGAACCCACACCGGAGAAAGGCCGTATCCATGCAAACAGTGCGACGCCCGATTCACCACCTCCTCGGCTAGAAATAATCATATGGTCACACACACGGGCATCAAAAAATTCCCGTGCACCATTTGCAACAAAGGCTGCACAAACCGTACAGAGCTTCGGATCCACATGACTAAACACACCGGCGAGAAACTATTCCCGTGCACTCAATGCGATCAGAGGTTCTCAACCGCATCTTATCTCGCCGTCCACAGGAGACATCACACGGGGGAGAAGAAATACGTATGCATCACATGTAACAAAGGTTACGTAGAATCAGGGTCATACAAGAAGCATTTACGAACCCACTCCCGAGCAGAGATAGAAGCGGCAGAAGCAAGAAAAGCTCAAGAAGAAGCAACCAATTCTCAGACTTCCAGCGGTCCTCCTCAGCTGACCACCAAGAACTACGCTTGCTCGCTCTGCCCCAAGTCATACACACAAGGACAAAATCTCAAAAAGCATATGGCGTCCCATGGACTACTCAATCCTTCTGCGCTggtagcagtcacaaatgcacatttggcacaacaacagcagcagcagcaacagcaacaacaacagcagcaacaacaacagcagcaacaacagcaacagcagcagcaacaacaacagcagcagcaacagcagacacatcaactcgttcaacagcaagcacaacctcaacttgtgcagaccattcagattcacccgcacGTCGCTGGTCACCATGGTCATCAGCCTATACAGATCCATGCAGTGGGAGTACATCAGGTACAGCAGCAGCAAGTCCACGTGGCCGCGTCCGCTTGTCAGCCTGTTCAAATTCCCAACATTGTGCAGGTTCAGCCAGGCCATGTCGCTGTCGGTGGTTTGCAGCAGCATGAACTGTCAGCCGTTTCCGTCGGCAACATCGCTCACAGAATCATTCTGCAGCCGCCTCATTCCATGTATCTCCATCACTGA
- Protein Sequence
- MATPNELQLDKICRACLLIKKDMRPLFGELIADMLMSCASVRVNESDGLPPQLCLQCVHQVSRSYAFKQQVEKSDSILQAYVNDCPQRQELIKHQHPPDTEISMQDMVTDNEVQFTYIDNSHSQGSRDSTDSGPVMEAFYITTSNHSADANSATPQIQENTLKVEDKDSSKSSEKNLDDDVCTVKEQPPSDAEEDDSYLELATFQASASVTPGRHICNLCHREFKHAKWLKTHMRLHSNWIKANCKKPPMCTICHRSFKGPGMLKLHMRTHEERPQRQPTCTICHRLFKTKTILYRHRQTHFEQKTHPCTICDKSFISNYALQAHLARHRGEKPHACITCGKTFYNTTDLKVHIRLHTGEKPLTCGDCGKTFRRHSTLCQHIKKHRGIRDHVCSVCSKAFFEVSKLTAHMRVHTGEKPYECSYCSRCFAQQSALIYHQRTHTGERPYPCKQCDARFTTSSARNNHMVTHTGIKKFPCTICNKGCTNRTELRIHMTKHTGEKLFPCTQCDQRFSTASYLAVHRRHHTGEKKYVCITCNKGYVESGSYKKHLRTHSRAEIEAAEARKAQEEATNSQTSSGPPQLTTKNYACSLCPKSYTQGQNLKKHMASHGLLNPSALVAVTNAHLAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTHQLVQQQAQPQLVQTIQIHPHVAGHHGHQPIQIHAVGVHQVQQQQVHVAASACQPVQIPNIVQVQPGHVAVGGLQQHELSAVSVGNIAHRIILQPPHSMYLHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00799448;
- 90% Identity
- iTF_00799448;
- 80% Identity
- -