Hjap000180.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Himalopsyche japonica
Gene Symbol
-
Assembly
GCA_028555115.1
Location
JAHFWJ010000471.1:1651606-1661955[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.5e-05 0.006 17.4 1.3 1 23 90 112 90 112 0.98
2 16 0.0086 0.61 11.1 3.3 1 23 118 140 118 140 0.97
3 16 4.5 3.2e+02 2.5 0.6 1 11 163 173 163 173 0.94
4 16 3.9e-06 0.00027 21.6 3.3 1 23 172 194 172 194 0.99
5 16 0.00091 0.065 14.1 3.9 1 23 200 222 200 222 0.98
6 16 4.6e-06 0.00033 21.4 2.2 1 23 228 250 228 250 0.99
7 16 0.00028 0.02 15.7 5.4 1 23 256 278 256 278 0.99
8 16 0.012 0.87 10.6 0.1 2 23 559 580 558 580 0.96
9 16 0.00036 0.026 15.4 4.5 1 21 792 812 792 814 0.95
10 16 0.00011 0.0076 17.1 0.8 1 23 820 842 820 842 0.99
11 16 8.8e-07 6.2e-05 23.6 2.9 1 23 848 870 848 870 0.99
12 16 0.0011 0.081 13.8 2.4 1 23 876 898 876 898 0.98
13 16 8.8e-08 6.3e-06 26.8 0.4 1 23 904 926 904 926 0.99
14 16 2.2e-05 0.0016 19.2 0.2 1 23 932 954 932 954 0.96
15 16 0.076 5.4 8.1 2.2 1 23 960 982 960 982 0.97
16 16 8.9e-06 0.00064 20.5 2.9 1 23 988 1012 988 1012 0.98

Sequence Information

Coding Sequence
ATGTTTGTAAAAAGAAATTCTCACAGTCTGGCCACCTTACCGAACATGCAAGAACTCATACAGGAGAAAAACCATACCAGTGTACATCTTGCGGTAAATCCTATACTAATGGCTCACATCTACGTGCACACTTTCGCTCTCACACTGGTGAACGACCTTACTCCTGTTCTCACTGCGGCAGGACTTTCTCACACCTCAATGGGCTCAAAATGCATGCTAATCTACATACAGGAGCCCACTCCTGACCGCAAGAATATGCCCAAAAGATTTTCCTGCGAGGTTTGCGGCTCCGCTTTCAAACTCAGCCATTCGTTGAAAGTCCACCTACGAAGTCATTCAGGGGAAAAACCGTTTGTGTGTCAGTTATGTTCGAAAGGTTTCACGCAGGCAGCACATCTTAAATGCCACGAGCTTACGCACAGTCGTCATCTAGGCGGCGGTAAAAAGAGCATTCCGATAAAAAAGAAGAAATTAAATTCAGCTTCATACAGATGTGTCACGTGTGAAAAGCCCTTCAAATGCGGTGTCTGCAGCCGATGCTTCACATCGCAATTTCTCCTCGCTTCTCACATGAGAACACACACGGGAGAAAAACCTTACCAGTGTGAAATCTGCTCCAAATGTTTTGCTCAAAGATCTGTCCTTATATGCCATCTACGAATGCACAAAGGCGATAAGAGATATACCTGTGAAATATGCTCGAAGAAATTCATCAGCCATTCAGACCTGGTGAAACATACGCGGATCCACACTGGAGTCAAGCCTTACAAATGCGGACTGTGCAGCTCTTGCTTCGGAAGAAGTAATCACCTCACGCGACACATGAAAATACATTTTGGAAATAGAAAAACATGCAAGAGCAGTAACACGAAACAGGACAATATTTCTAGCACGCAATTTATTAAACCTAGCCAAAATTTAAACAGTGAATATTGTAACGCAGATGTACTAAACCAAGAAATGAATAATGTGGGACCGTTTTATGATAAGTTTAAAGAGGACATTGACAATCCTGTGAAAATAAATCAATTTAATTCATGTTATGATAACTCTGCTCATATTTTAAACCAAAAACCGAATGTTAGTGTTAATTTAAGCAATGGCTACCACGCCCCGATGGTTGACTATCATAATTATATCAGCAACAACACTAGGATATCTGGAAATCATCAGGGAGACTCGTCCATCTTAGACTCGTTTATGATCTGCGATAAAAATGTATTACATGACGACTTTCATAAAGAACAGCGGATGAACATGATAGATGTTTCACATATAGGTTTAGTTGACAGTCATGAAAAGGAACTAAGTGATAACTTCTGTCGTTATCCAACAGAGGTCTACGATGAACACAATAAACAGAGTTGCTTTAATACTAATTTAAATACTAGAGATCAATTCGATGATAGAAATATGTCGCTAAATTATGACTGTAAATTGTTGGGGGCGAAAACATACAGCAGTTATGAGCAGATCGAGAATGTGTATGCGAAGCTGCATTCGCAAAATGGGGAATTTATGCGCGAGAAACAAGCAACACAATCATTTGAGCGGGAAAATAAAAGCTGTGATTTTAAAAACACTTTAAAATGGCGGTATCAGAATTCTAATTACTGTTTGAAGGCCAGTTGTGATGAAGCCAGTATAAAAGTCGTGGAGAATTGCAAGAAATGGCAGTGCGGCATATGTGATGATAGTTTTCAAACACAAATCGAATTAACTGAACACGTCAATTTGCATAAAAATAATATGTCTGCCGTGAGGTATACCAAATTGGTAACAAATTCACAATCTGGCATTTTAGAAGAGGTCCAAATCATTCCTAGAAAAAAACTACAAATAGTCCCCAAAGAGATATTACAAACTATAGCCGATAGTTATTTCATAGACAAGAAAGATAAAACGTGTATCTTAGATAATGGTAACACTGTAGATTCATGTATCACTGTTGAAAAGGGCAATATGGAGAATAAATCACAGGAATTGCCGCATAAATTAAACAGTAGAAAATTGTTGGACGCTTCTGATATTGGGCCTGGGAATACTTCAAATGAGATCGAAGAAGATGGAAGTGAAGTGGATGTTTGTGATGATAAAAAGAAAAGTGATTTGAATGATGACGGTGACAATCCTTTTCATGAATCATCTGATGAAGACAATATGCCCCTTGTAAATAAGGTGATAAAATGTAATTCTGAAGCTATTGAAAATGAATGCAGCACTACAGACAAGCAATTGGATCAATCGCCTGAAAGTTTTTTGAAAATTACCAAAGTCAAAAGTATTAGTGATTGCGCTAAAGCCACAATCAAACAAAACAAGTCAAGAAAACTTAAAAAAGATACAACACAAGACGATGTCCGTCGTAAAGAACATTCTTGTACCCAGTGTCAAAAAGTGTTCAAGCAATCGAACGCGTTAATGGTGCACATGAGATGTCACACTGGCGAACGTCCATACCAATGTCAGTTTTGTCCGCGCAGGTTCGCACAGGGCGGTCAGTTGAAGGAGCACTCCCGGACACATACCAAAGAAAGGCCGTATCAATGTATGCTTTGCGGCAAGGTTTTCGTCAACACCACCCACCTCAAATCTCATATGAAGACCCATACGGGTGAAAAGCCCTTCGAGTGTGAAGTCTGCCACAAGAGATTTGGACACCGTGTTGGATGGAAGCTGCACCAAAACATTCATACTGGAGAGACGCCCTACAAATGCGAGCTCTGTGGAAGAGGTTTTCGTCAACCATCGTCCCTTCGTTCACACTTGCGTATTCACACCGGAGAAAAGCCATACGCGTGTCTCATATGTTCAAAGTCATTTTCGCAGAAAGCAACTTTAGAGGCGCATTCTAGAGGACATCGCGGAGAGAGACCTCATCGTTGCAGTGTATGCCAAAGGAGCTTTTTAACGAGTGGTGATAGAACTAAACACGAGGCCACTCATGCACCTGATAGGCCATTCCAGTGCACTGCTCCCCTCTGCGTGAAAACATTCAAAAGGAACGCGCACCTTAAACGTCATATGTTTACACATAGAATTGTAGAATGTGCTTGA
Protein Sequence
MFVKRNSHSLATLPNMQELIQEKNHTSVHLAVNPILMAHIYVHTFALTLVNDLTPVLTAAGLSHTSMGSKCMLIYIQEPTPDRKNMPKRFSCEVCGSAFKLSHSLKVHLRSHSGEKPFVCQLCSKGFTQAAHLKCHELTHSRHLGGGKKSIPIKKKKLNSASYRCVTCEKPFKCGVCSRCFTSQFLLASHMRTHTGEKPYQCEICSKCFAQRSVLICHLRMHKGDKRYTCEICSKKFISHSDLVKHTRIHTGVKPYKCGLCSSCFGRSNHLTRHMKIHFGNRKTCKSSNTKQDNISSTQFIKPSQNLNSEYCNADVLNQEMNNVGPFYDKFKEDIDNPVKINQFNSCYDNSAHILNQKPNVSVNLSNGYHAPMVDYHNYISNNTRISGNHQGDSSILDSFMICDKNVLHDDFHKEQRMNMIDVSHIGLVDSHEKELSDNFCRYPTEVYDEHNKQSCFNTNLNTRDQFDDRNMSLNYDCKLLGAKTYSSYEQIENVYAKLHSQNGEFMREKQATQSFERENKSCDFKNTLKWRYQNSNYCLKASCDEASIKVVENCKKWQCGICDDSFQTQIELTEHVNLHKNNMSAVRYTKLVTNSQSGILEEVQIIPRKKLQIVPKEILQTIADSYFIDKKDKTCILDNGNTVDSCITVEKGNMENKSQELPHKLNSRKLLDASDIGPGNTSNEIEEDGSEVDVCDDKKKSDLNDDGDNPFHESSDEDNMPLVNKVIKCNSEAIENECSTTDKQLDQSPESFLKITKVKSISDCAKATIKQNKSRKLKKDTTQDDVRRKEHSCTQCQKVFKQSNALMVHMRCHTGERPYQCQFCPRRFAQGGQLKEHSRTHTKERPYQCMLCGKVFVNTTHLKSHMKTHTGEKPFECEVCHKRFGHRVGWKLHQNIHTGETPYKCELCGRGFRQPSSLRSHLRIHTGEKPYACLICSKSFSQKATLEAHSRGHRGERPHRCSVCQRSFLTSGDRTKHEATHAPDRPFQCTAPLCVKTFKRNAHLKRHMFTHRIVECA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-