Hjap011726.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- -
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000832.1:931591-944440[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.5e-06 0.00018 22.2 1.3 1 23 339 361 339 361 0.98 2 13 3.2e-05 0.0023 18.7 1.8 1 23 367 389 367 389 0.98 3 13 0.00061 0.044 14.7 1.2 2 23 409 430 408 430 0.94 4 13 5.3e-05 0.0038 18.0 3.9 2 23 438 459 437 459 0.97 5 13 0.0029 0.2 12.6 4.6 1 23 465 487 465 487 0.98 6 13 5.3e-05 0.0038 18.0 2.3 1 23 496 518 496 518 0.97 7 13 9.3e-07 6.6e-05 23.6 0.2 2 23 525 546 524 546 0.97 8 13 9.9e-07 7e-05 23.5 4.2 1 23 552 574 552 574 0.98 9 13 5.1e-07 3.6e-05 24.4 0.2 1 23 580 602 580 602 0.98 10 13 1.9e-06 0.00013 22.6 1.3 1 23 608 630 608 630 0.98 11 13 0.0011 0.078 13.9 4.3 1 23 636 657 636 657 0.97 12 13 4.2e-06 0.0003 21.5 3.8 1 23 663 685 663 685 0.98 13 13 1.5e-05 0.0011 19.7 2.0 1 23 691 714 691 714 0.97
Sequence Information
- Coding Sequence
- ATGAGTGAGATTATTTTACAAGCTGATGAAAATGAGCTCAACGCCGCTCTCGGTGAATCCTTACAATCGGCCGTCGTAGGAAATATTAATGGAACTAGCCTAAATCGTATTTTGGTTGTCGGAACAGCGAGTGCGATCGGACACAACGGCGACGCTACGTCAATTCCCGTCGAAGAAATTGAACTCAACTTACCCCTCGAATTCGATAAATATATATCAGTGGACACCAGTCAAATTGCGAAGGTTTGCCGCATATGTTTGTGTGAAAAATCAGACATGCACCCTTTATTTGAAACATGGGAGGTTGAAACTATAGCCGAAATGTTAACATCGTTTGCAGCAGTACAGCTGTCTTTTGGAGATGGTCTACCCGAGAGTGTATGTGGTGAGTGCAGTGAACTTGTTGGAAAATGCTTTGCCTTCAAACAACTATGCGAACGTTCCGAATCCATGTTACGATGCCTCGTCACACAAGGACATCTTCAAGGAATGAAGCAAGAACCTTCCATCGAAAATGCAAACGAGACAGCTTCCAATTCACCCAACTCGAAACAAGACCAGATCGGCACATATGAAAACAAAGAAGAGCCTCCGGACTATGAAGAATTCATGGATGATGATTTACAGCGTTCTTCGTCGCCTGTCATCGGAAATGTCACCACCATCTGTTCCTCTAATAGCAAGATGTTTCATAAATCAACGAGAAAAACAAAATCTGGCATGAGAAAATTATCTATCATCAACAACCCTACTGTGACGATCAACCCGGCAACTAGACTCAGGAAAGAAATTAGACGGGAAAAACGTAGAAAATATTCCAATAGATCACTAGATGTAAATAACTCGTCAAACCAAAGAAATAGACCGTTGCGAACTTTGGCCAACTTATCAAGGAAATACAAAGACATGGTTAAGCAGAAATATGAAATCGATGAAGCCGTAAACTACGACAGCAGTTACAGTCCTTTAGGAGTCGAACTTATTTCAGAGAAATATGAAAACAAAAGCAGCAAATTCACTTGTAGCTCTTGCGGAAAAGGCTTCAGCGATCAACGCAAATTGACGCGACATGAAAGAATTCATCTCCAGGTGAAGCCTTTTCACTGCAGCATTTGTCAGAAGGGATTCAACGAGTCAGGTGACCTAACAAGGCATGCTAGAAAGCATGCAAGAGATTTGGATAAAAGCAGAGTGGTGAAAGGTGAAATGGACGGTGAGCGGTTGCCGTGCGAACACTGCCATCTTACTTTCAGTTCTGAAGGAGATCTCAGAATCCATTCCTCCATTCACTTAGTCGAACAAGGCCGAATAAAATGCAATCACTGTGACAAAGAATTCCACACTGCCTTGCAACTGAAACGACACGTAAGAATACACTTGTCCGACAAGCCTCACAAGTGCCGAGTATGCCATAAAGGATTTCCGGAAATGGGCTCCCTCACTAGACACTTTAGACGACACACCGGAGAGACTCGGGAGAAGAAACATATTTGTAGCATTTGTGGAAAAGCTTATTATGATCGTCATTcgttaagcattcacgagcgaacccacaccggggagaaaccctggatttgttcagactgcggcaaaggcttcatcgactcgcgcctactcaactcccatatgaagacgcacagcgatcacaaaccttatgcttgtaaaacgtgtgataaaagATTTAAACACGAATCAACATtgacgacgcacatacgaactcataccggtgagaagccctacatttgctccgtttgtgggaatgcctttgtccagtcttcgaatctatcattgcacatgcgtacgcatacacGAGAAAAGCCATACAGCTGTGAATACTGCGTAAAGAAATTTTCCAGTTCGTCAGCACTCACTACACACACACGAATTCACACCGGGGAAAAGCCATATTTCTGCAAAATATGTGACAAAAGATTTGCACGTCACGATATGACAACacacatgcgaacccacactggagagaaaccctacgtctgttcagtttgccataaaagattcaccactcctggtcaactgcaccagcacacaagaatacatactgGTGAACGGCCATATATATGTGGAATATGCAACAAAGGCTGTGCAACATCTAGTTACCTTAAAAAACACATGTCGAAATCTCACAACACTGTGGCAATACAGCCCACCGCCTCTACGCCGCCTCCCCTAATCACTCACCCCAAAGTGGAAAAGATAGAGAGCGTAACCGACTGTGAATTGGATCCGAATGAAAATCCCAATATTCCACCGGACCAAGTGATCTCTTCCGGACAAGTAATCAACGTCGCCAACACTTTAACTCTGACATCGAACACTTTGAATGTCGTCGCCGTAGAGAATGCAAACGGCGAGCTTAGCATAACGACAGCGAACGCTCTGAATGTGGCAACGCTGACCGCTCAGCATCATATGTCGGCAGACGGGGAGGTGCCCGGAGCTATCGTAACAAACACGCATTATATGTCTCAAGAGAAACTCTACCAAATCAGTCGAAACCTTCTGCGGATACGTCGCGTTTCAAATATCTTACAACCCACACAGTTGACAATCAATGAATTTGATGCGGAAAGTCCTTGA
- Protein Sequence
- MSEIILQADENELNAALGESLQSAVVGNINGTSLNRILVVGTASAIGHNGDATSIPVEEIELNLPLEFDKYISVDTSQIAKVCRICLCEKSDMHPLFETWEVETIAEMLTSFAAVQLSFGDGLPESVCGECSELVGKCFAFKQLCERSESMLRCLVTQGHLQGMKQEPSIENANETASNSPNSKQDQIGTYENKEEPPDYEEFMDDDLQRSSSPVIGNVTTICSSNSKMFHKSTRKTKSGMRKLSIINNPTVTINPATRLRKEIRREKRRKYSNRSLDVNNSSNQRNRPLRTLANLSRKYKDMVKQKYEIDEAVNYDSSYSPLGVELISEKYENKSSKFTCSSCGKGFSDQRKLTRHERIHLQVKPFHCSICQKGFNESGDLTRHARKHARDLDKSRVVKGEMDGERLPCEHCHLTFSSEGDLRIHSSIHLVEQGRIKCNHCDKEFHTALQLKRHVRIHLSDKPHKCRVCHKGFPEMGSLTRHFRRHTGETREKKHICSICGKAYYDRHSLSIHERTHTGEKPWICSDCGKGFIDSRLLNSHMKTHSDHKPYACKTCDKRFKHESTLTTHIRTHTGEKPYICSVCGNAFVQSSNLSLHMRTHTREKPYSCEYCVKKFSSSSALTTHTRIHTGEKPYFCKICDKRFARHDMTTHMRTHTGEKPYVCSVCHKRFTTPGQLHQHTRIHTGERPYICGICNKGCATSSYLKKHMSKSHNTVAIQPTASTPPPLITHPKVEKIESVTDCELDPNENPNIPPDQVISSGQVINVANTLTLTSNTLNVVAVENANGELSITTANALNVATLTAQHHMSADGEVPGAIVTNTHYMSQEKLYQISRNLLRIRRVSNILQPTQLTINEFDAESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00801127;
- 90% Identity
- iTF_00801127;
- 80% Identity
- -