Hjap008507.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Himalopsyche japonica
Gene Symbol
-
Assembly
GCA_028555115.1
Location
JAHFWJ010000483.1:4078625-4085615[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00011 0.008 17.0 1.8 1 23 139 162 139 162 0.96
2 22 7.7e-06 0.00055 20.7 1.3 1 23 167 189 167 189 0.98
3 22 0.35 25 6.0 8.5 1 23 197 219 197 219 0.97
4 22 0.024 1.7 9.7 4.6 1 23 228 250 228 250 0.96
5 22 0.011 0.78 10.7 0.1 1 23 432 455 432 455 0.97
6 22 0.0034 0.24 12.4 2.2 1 23 490 512 490 512 0.98
7 22 0.00092 0.065 14.1 2.6 1 23 518 541 518 541 0.96
8 22 0.00054 0.038 14.9 0.9 1 23 596 618 596 618 0.98
9 22 5.1e-05 0.0036 18.1 1.4 1 23 624 647 624 647 0.96
10 22 2.5e-05 0.0018 19.0 0.9 1 23 653 675 653 675 0.99
11 22 9.6e-06 0.00069 20.4 2.9 1 23 681 703 681 703 0.97
12 22 0.001 0.074 14.0 4.3 1 23 709 731 709 731 0.98
13 22 3.2e-06 0.00023 21.9 1.1 1 23 737 759 737 759 0.98
14 22 0.00033 0.023 15.5 0.9 1 17 765 781 765 782 0.95
15 22 0.26 19 6.4 0.2 3 23 830 851 829 851 0.93
16 22 0.54 38 5.4 1.1 1 23 856 877 856 877 0.96
17 22 0.016 1.1 10.2 2.3 3 23 990 1011 989 1011 0.95
18 22 1.4e-05 0.001 19.9 0.7 1 23 1017 1039 1017 1039 0.96
19 22 0.00016 0.012 16.5 0.6 1 23 1045 1068 1045 1068 0.95
20 22 0.00045 0.032 15.1 0.6 1 23 1074 1096 1074 1096 0.97
21 22 6.2e-06 0.00045 21.0 2.3 1 23 1102 1124 1102 1124 0.96
22 22 8.1e-05 0.0058 17.4 2.6 1 23 1130 1153 1130 1153 0.96

Sequence Information

Coding Sequence
ATGGAAGGAAGATCACGGCTTAAACGGAATTCAAAAAAACTGACCTCCGGAATCGACAGTTTAGATTTCAAATTCGATTCGAAGACAAGGCGGCGGTCGTCGGCGTCCGATGCAATACAGGAGAGCCTTAATGAGCCCAATGATGATAATTACTCCAGCGATGATAATGTGGCCATCAGTACGCTCTCGCTGAAAGTTCAGCGGTCGATTGCCAAAGAGGACTCTGAATGTTCTAGCGACGGGGAATTTAACTGTGACTATTTCGATAATGATAGCGAATCGTCAGTGGAAGACGTGAAAGCTTCAATTGAGAGTGACAGAAATCAAAATGTGTTCTGTCATTTGTGCAAAGTAAACATATTAGCAAAGGTATACATAAAACATATACGCGCTCACATTAATGAGAAATTATTATACATGTGCGAGCTCTGCGGAAGAGAATTCAAGCACCCGCAAAATATCCAGCGGCACGTTAAACAATTTCATGAAAAATTCCGATATCCCTGTGATGTTTGCAATAAAACTTTCATCACCAATCACGCCCTGCAGGAGCATAAGAGACTGCACATCAAAAACGCTCCTCGTCCGCATGTATGCCACGCGTGCGGGAAGTCTTACAACTCCCACTGCAGTTACATTCAACACCGCAAGTGGCATCTCAAGATGAAGTTTAAAACGGAGCACTCGTGCCCTCACTGTCCGAAGACTTTCCTTCACAAGGCGTTTTTCGACCGGCACATTATCGTTCACAGCGATTACCGGCCGTTCCCCTGCCTCTTGTGTCCGAGGAAGTCCGCTCGTCCCCGCCTCCTGCCGGACTCTCTTCACCAAAATCCACGGCAACGCCGCGACGACGATTATCTCTCTATCGGTGAAGGTTCACCTTTTGAATTTCAATCTGAAAAAAGTGTAGTTTATAGTGACAGCATTAAATTTGAACCCGCAGTCGAAAACCGCGTCTCCCTATATCAACCCGAACACGGCTTTAACGTTCCCAATGGTAAAACTGAGGTCTTAGGTACGATCGAAGGTATGCCGGATTTTAATGCCGAATTCAATTTAGAGTCTATAGGTATTCAGAAGCGAATTAATTTGCTAAGGAATGTGGTAGTCAAATTAAAAAATCATCTGAGCACATGCCACAAAACTAATAACGAAGAAGTGAATAATGATGATGAAGATGAGGACATGGAAGATTATGAACCCCTCTCCAGATTGCTGGCCGGACGGGCCGAAGGTTCTATTAAAAGCGGGGATAGCGAATTTGAAGCTGATCACGTTGAAGAAGCTCAGTATCCTTGCACCAGGTGTACATATGTTGCCGACGATAAAGATCAACTCGAGAGTCACACTGAAACCGACCACGGGCATCTGCGCATGTTCAAAAGGAGCAGCCGCCGCATATATGACCTTCGCACTCGGCAGGAATTGGAGAAAGCAAAAGTCAAAGTGAATGGGAAAAATCGATACCGCTGTACCGTCTGCGACAAATACTTGACTAGTGCTCACAGCTTTGTCACTCATCAGACCATTCATTCGGGCCAGAAACTGTTCTCCTGTCAAATATGCGGTCGGAAATTTAGACTGCTCGGTTTTTTGAAGAATCACCTCAAACATATTCATTCGATGAAGAGCAAAGATGATTTGAATCAGTTTCAAATATCTAATAATCCGGCTGATCTCATCGAAGACGACATCGCAAGACAGTTGAAAAAGGGTGAAAAGAACTACTTAGATTACAAAGCGATCGAAAAGGTTAAGATTATTATCGACGGTGGAGTATTTTACAAGTGCGAAATCTGTGATAAAAAGCTCACTAGGGTTAATTATTATTTAAGTCACATGTCTATACATACTGGAGAGAAAAAATTCATCTGTCACCTGTGCGGGAAGAGATTCAGACTCGCCACAATGCTGCAGATACATTTGCGGTTGACTCATGAACGCATCAAGAACTACACCTGCGACATCTGCCAGCAGAAATTCGGCACGAGCACAAACCTATCGGAGCATCGCCGCATACATACCGGAGAAAGACCGCACATTTGCGCCAAATGCGGAAAACGGTTCAAGCAAAAATCCGCTCTGTTCGTTCACAACAGGACCCACACGGACTATTTCCCGTTTCAGTGTAGGCACTGTGACTCCAAGTTCAGGATACAGTCGCAATTGAACTATCACATGATCAAACACACCGGGGAGACTCCGTATCCGTGTGATGTCTGCGGAAAGGCTTTCGCAATCAAGAGTCATCTCAATCGGCATAAAAAGAATCACGTCGAGGGTAGACCTTATCCGTGTACAGAGTGCGATAAAGCGTTCAGACATAAGAAGAATCTCAAATCTCTGCGCGGAAGTCGTCCGGATACTGCTCGACAGTCCGCGTCCAATGTCAAGCGACCGTCTCTCGCTGACGACTCTCCGGGGTCGCTTAAAAAGATACCCAAGACTGAATCCGGAGAATTTAAAATACCGAACTCGCACGGTTGCGTCTACTGCGGGCAGTCCCATCCCGATTCCGAATCGCTCACCGCTCACTTGCTGGACTATCACGCCGATTTGCTCTTCCACTGCGACGTCTGCGGTTTGTATCTCGACAGAAAATTGCTCATCTCCCACATGTCTCAACACGCAGAAGAGCAGTACGCCAACGAATCGAATGAAAGTAATCCGGTCAAAAGTGACCCCGGAAACTCTGCTCAAATATCAGAATTAAAACCGCTCGTTTCCGATGTCGCCCTTGTTGAAACCAACGATGACGCCTTTTCGATATCAAGTCATTCCAATGGACGATTCGAACCCATCCCCGATTCCGTGTTCGAAGCTATTAAAGACACGGAGGAGACAGGAGAACCTTTTGTCGAGCCGTTGCCGAAAACTTTAGAACAGACATGTGAAGACATGCAAAAGATGTCTGAGAAACTATCCTCTAGAAATGTGTCGTCCAATGAAGCCAatcgaagaatttgtccaatatgctcgaaagagttcaGGGTGGCCTCGAGTTATCACTATCACGTGAAACACTTTCACGGAGGCGTCAAAGATCACAGCTGTAATGTCTGCGGTCGTAGTTTTGCCGTGAAAAGCGCCCTCACTAACCACCTCACTCTGCACACGGGAGAGAAGCCCTACTCCTGCCCGCAGTGCGGAAAGCAATTCCGCTCCAAAGCCAGTATATACATCCACTATAACAATGTCCACTGCGACAATAAGAAGTTTCCCTGCCCCACCTGCAACAGGTCGTTCAGGTGGAAGCAGAAACTCCTGCGCCATATCGCTAGCCATACTAAAGagaagaagcacttctgccccgagtgcaagaagggcttcggagtcaaatacgatctcaccagacacatgaagacgcacttgaaagccaagccttacacgtgcgacaaatgcgggatgaactttgcccagaggcgctacttgaaaaagcacaCAGAAAAAAAACATTCCGCAGCTGTCAAATGA
Protein Sequence
MEGRSRLKRNSKKLTSGIDSLDFKFDSKTRRRSSASDAIQESLNEPNDDNYSSDDNVAISTLSLKVQRSIAKEDSECSSDGEFNCDYFDNDSESSVEDVKASIESDRNQNVFCHLCKVNILAKVYIKHIRAHINEKLLYMCELCGREFKHPQNIQRHVKQFHEKFRYPCDVCNKTFITNHALQEHKRLHIKNAPRPHVCHACGKSYNSHCSYIQHRKWHLKMKFKTEHSCPHCPKTFLHKAFFDRHIIVHSDYRPFPCLLCPRKSARPRLLPDSLHQNPRQRRDDDYLSIGEGSPFEFQSEKSVVYSDSIKFEPAVENRVSLYQPEHGFNVPNGKTEVLGTIEGMPDFNAEFNLESIGIQKRINLLRNVVVKLKNHLSTCHKTNNEEVNNDDEDEDMEDYEPLSRLLAGRAEGSIKSGDSEFEADHVEEAQYPCTRCTYVADDKDQLESHTETDHGHLRMFKRSSRRIYDLRTRQELEKAKVKVNGKNRYRCTVCDKYLTSAHSFVTHQTIHSGQKLFSCQICGRKFRLLGFLKNHLKHIHSMKSKDDLNQFQISNNPADLIEDDIARQLKKGEKNYLDYKAIEKVKIIIDGGVFYKCEICDKKLTRVNYYLSHMSIHTGEKKFICHLCGKRFRLATMLQIHLRLTHERIKNYTCDICQQKFGTSTNLSEHRRIHTGERPHICAKCGKRFKQKSALFVHNRTHTDYFPFQCRHCDSKFRIQSQLNYHMIKHTGETPYPCDVCGKAFAIKSHLNRHKKNHVEGRPYPCTECDKAFRHKKNLKSLRGSRPDTARQSASNVKRPSLADDSPGSLKKIPKTESGEFKIPNSHGCVYCGQSHPDSESLTAHLLDYHADLLFHCDVCGLYLDRKLLISHMSQHAEEQYANESNESNPVKSDPGNSAQISELKPLVSDVALVETNDDAFSISSHSNGRFEPIPDSVFEAIKDTEETGEPFVEPLPKTLEQTCEDMQKMSEKLSSRNVSSNEANRRICPICSKEFRVASSYHYHVKHFHGGVKDHSCNVCGRSFAVKSALTNHLTLHTGEKPYSCPQCGKQFRSKASIYIHYNNVHCDNKKFPCPTCNRSFRWKQKLLRHIASHTKEKKHFCPECKKGFGVKYDLTRHMKTHLKAKPYTCDKCGMNFAQRRYLKKHTEKKHSAAVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-