Hjap019448.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- -
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000819.1:785962-786723[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-08 4.9e-05 23.4 0.0 5 38 23 55 19 60 0.88 2 2 2.1 4.3e+03 -2.0 0.0 5 12 99 106 97 106 0.86
Sequence Information
- Coding Sequence
- ATGGCTCCTACAACATACCAGCGAAAACCTGGTGCAGTTCCAAGAAAACATTGTGATCCTATTCATATGAAAGCTGCGCTTGAGGAGGTTGTCAAAGGAAATTCACTCAGGTGTGCAGCTGAACTATACAATATCAACAGACTAACGTTAAACAGATATTACATGAGATTAAAAGAAAAAGATCCAAGGCTTACACCCAAAAAAGTTGCCAATACAAGCTTGGACTTCTTCATTCCCAACTACAAAAAGAGACAAATATTTTCAGATGAAATGGAAATGAGATTGGCTAATTCAATCACAGAGGCTGTTGAGTCGGTTGATGTTATTACTACAGTTCAGATAAGAACTGTTGCATATGAGTTTGCTGTAGAACATGAAATTGCAGTACCTGATATTTGGCATAAAAATCATATGGCGGGATTTGAATGGTATCGAGCTTTCATTGAAAGACATCCACATTTATTGAAAATTTTACCACTACGTTCTGGTCAAGGATTACCACTGCCCCCAAAAAAGCCTTATAAAAAACCGTCCATATCACATACAAGAAGtgttcatggtcacagtatatttaatgaaatgatttcagatgatgaatatgctgagataaaaattgaaccagatgatgatgatgatgatgatgatgatgatgatgatgatgatgacgacgatgatactgtggttttttctgtcggtgtaaaagatgaaaatgaagatgaaaatgaagacgatgaaggttcctggattattgtagtgaattaa
- Protein Sequence
- MAPTTYQRKPGAVPRKHCDPIHMKAALEEVVKGNSLRCAAELYNINRLTLNRYYMRLKEKDPRLTPKKVANTSLDFFIPNYKKRQIFSDEMEMRLANSITEAVESVDVITTVQIRTVAYEFAVEHEIAVPDIWHKNHMAGFEWYRAFIERHPHLLKILPLRSGQGLPLPPKKPYKKPSISHTRSVHGHSIFNEMISDDEYAEIKIEPDDDDDDDDDDDDDDDDDDTVVFSVGVKDENEDENEDDEGSWIIVVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00800904; iTF_00799198;
- 90% Identity
- -
- 80% Identity
- -