Hjap006790.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- bab1
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000143.1:25078-28256[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-12 3.4e-09 36.7 0.0 3 45 309 351 307 351 0.94
Sequence Information
- Coding Sequence
- ATGGGCAGCAGTGAGGGACAAACTtactgtttgcgatggaacaaccacaagtcgaatctggtcgagattctcgacattctgatcaagatggagtattacgtggactgcacgatcgtcgtcgacgaccacgtgcagttcaaagcccatcgagtgattctcgcggccaattctccgtatttccaaacaatcctcatggatgtgccaatggatcattgcagtatcctgtttcccggtgtcaaggagtttgagatgagagctctcctggagtatatgtacaccggagaagtaaacgttacgcaATCACAGATACCGAGAATAATGAAAATTGCTGAACAGTTGGAAGTTAAGGGATTGTTCGATATGACTGAATTGAGGCAGAGATTTAAGCAAGAAGAACCTGAAGGTGCAAGATCTCCTTCCGTCTGTGCCATGGCTGCAGCTCAAAGCAGCTGCGGCGGTTCTCCTCCTTCTCATTGGCCTCAACTTCCCATGCCTAGACCACCAGCGGCTTTGAGTGCATCATACGAAACTCCCGGTGACATGAATCCGTTGAAGAGGAAAAAGCTGTCTAGTATTTCAAGCATGCTCATGTCTCGGGATACTCCAATTCTTCGAAATGTTCTGGCGCAAACCAGCGCAGCAGATTCTTCACAACCGGCCGCTCTCGTCTGTCAACCGATTCCGAGGGCCGATCGGCTACATTCTAACGGATCAGCTCATGATAATTATAAGCACCAACGCATGGAAATGTCAGAAGAAGCTCACTCTCCATACACCGACAAGTCTTTTGATGAAGATAGCATGAACCGATCTCTGCATCCCTCTTCACCTCCTCAAAACTTTCCTAGTGATTTGCGCTGTGGAATCGCGCCCTATGTTCCTCAACAGAAACCTGAATGGAAACGGTACAAACAATACACCAGGAGTGATATTACCTCAGCAATTGAATGCGTCAGACACGGAATGAGCGCTCTTCAAGCCTCTCGAAAATTTGGAGTACCCTCTCGAACACTTTATGACAAAGTCAAGAAACTCGGCATCACAACCAGCAGGCCAATGAACAGAAGCATAAAGAGAGAACCTAATGGCAGTCCCGCCTCCCTCGGGGGAAGTTGGATGGGAGGACATCCTCGCGATGACCGAGACGAAGCTGTTCATCCAGCCGTAGGATTACTAGACGCAGGACTTTTACAGCAAGCTCTCGAAGGTCGCGCTGACCTAGGAGAGAGAGAAGCACTTCACGCAATGGCCATAGCTGCAGCCGCTCATGCGGCCGCTGCCGGACTCGGTCGCTCGCCACCTCGACCTCACAGTCCAGGAGTCCTTAATTTTATCCGACGGGCGAGTCCCAGCCCACCCAGACCGTCCCGACCCAATGGTTTACATCCTGAAGAACCCGATGATGAAAACCACGTGGAGGATCTCTCTGTTGGTCGTAAACATGATCACAATCCACCAGGAGTTATCGTCCAACCGATGAATCAAGTTTCGGCCATTATTAAAAAAGAGGATGCCCTAAGAGAATATCAGGAAGACACTCGGAGAGGGCTATCCATTGACTGCGGAGATAGGGTTTGA
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDILIKMEYYVDCTIVVDDHVQFKAHRVILAANSPYFQTILMDVPMDHCSILFPGVKEFEMRALLEYMYTGEVNVTQSQIPRIMKIAEQLEVKGLFDMTELRQRFKQEEPEGARSPSVCAMAAAQSSCGGSPPSHWPQLPMPRPPAALSASYETPGDMNPLKRKKLSSISSMLMSRDTPILRNVLAQTSAADSSQPAALVCQPIPRADRLHSNGSAHDNYKHQRMEMSEEAHSPYTDKSFDEDSMNRSLHPSSPPQNFPSDLRCGIAPYVPQQKPEWKRYKQYTRSDITSAIECVRHGMSALQASRKFGVPSRTLYDKVKKLGITTSRPMNRSIKREPNGSPASLGGSWMGGHPRDDRDEAVHPAVGLLDAGLLQQALEGRADLGEREALHAMAIAAAAHAAAAGLGRSPPRPHSPGVLNFIRRASPSPPRPSRPNGLHPEEPDDENHVEDLSVGRKHDHNPPGVIVQPMNQVSAIIKKEDALREYQEDTRRGLSIDCGDRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00897946;
- 90% Identity
- iTF_00800901;
- 80% Identity
- iTF_00800304;