Hjap019512.1
Basic Information
- Insect
- Himalopsyche japonica
- Gene Symbol
- -
- Assembly
- GCA_028555115.1
- Location
- JAHFWJ010000678.1:381239-387335[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.6e-12 1.8e-08 34.4 0.0 4 39 206 242 203 246 0.90 2 4 6.6e-12 1.3e-08 34.8 0.1 2 39 258 295 257 298 0.93 3 4 7e-16 1.4e-12 47.5 0.0 2 45 313 357 312 357 0.97 4 4 1.1e-17 2.2e-14 53.3 0.0 1 42 364 406 364 407 0.95
Sequence Information
- Coding Sequence
- ATGACGGGCCATCCAGATTCCCCGCCTCAGTCCCCCAGCGAGGATGCTGCAGGATGCACCATCGGCAGTTCGGAGAGACATTTAGAAAATAGTAACGCCATGCACACTCTGGCATTAGCTCAGTCTCCTCATCAACCAATTTTACACCATTTACAGAATATAGATAACGGTAGCGTGAATGTGAATTGCATAGAAACAGATTATGCGTTACCTGTTCCTATGGCACCTGCAGCGACTCCTGTACAAGTATCGTCCATTTCAATGGACCCCAATGATCCTTCAATGATGCACCAAGACGCCGCATGTGGAAATGATTCCACGCCAGATATAAAAGTGAAATTTGAGACATTGCGGTCAATGGATCAAAAGATAACCCTGGATATGGACACTCACATGAGTCAACAAGGAAGGAATTCTATTTCATCAATGGATTCTCACCCATCAATGATGCTCACTTCAGAATTATTGGGACTTATTCCTGGAGATCATGATGGAAATAATGAAGACATCCAATTGAATGAAGACTCAAATGACTTGTCAAGTGACGGCATGCTCCAATCTTCTAGAGGGCTAATGCACGGGCTCGGTACTGGCCCCAAAACATGGTCTCAGCAAGATATGGAAAATGCTCTAGATGCCTTAAGAAATCACAATATGAGTCTAACCAAAGCTTCGTCAACTTATGGTATTCCATCAACAACACTTTGGCAAAGAGCACACAGGCTTGGCATTGACACCCCGAAGAAAGAAGGGCCGTCGAAGTCATGGAGCGAAGGCAATTTGCACAGTGCTCTACAAGCTTTAAGAACAGGAACTATTTCAGCAAATAAGGCTAGCAAAGCATACGGTATACCAAGCAGCACCTTGTACAAGATAGCGCGACGGGAAGGAATAAGACTTGCAGCACCGTTTAATGCTGCGCCTACGGCTTGGCGTCCGGGAGATCTAGAGAGAGCATTGCATTCCATTCGCTCAGGACATTCCTCCGTACAGCGGGCTTCTACTGAATTTGGTATTCCAACAGGTACACTTTATGGCAGATGTAAACGTGAAGGTATAGAGTTATCCCGATCAAATCCTACACCGTGGTCAGAAGATGCAATGGGAGAGGCTTTAGAAGCTGTTAGAATAGGCCAAATGTCAATTAATCAAGCCGCTATACATTACAACTTACCGTATTCATCGCTATATGGCCGTTTTAAAAGATGTAAATATGAAGGAGATATTACCGGTGGTGGTGAACCTCCTCTGCAGTTGCATCCATCTCAGGAGCATCACAATTCTCATCAGATGGTGCAACAATCTGGGTTAGGACATCATAGCGTTCACATTCAAGATCATCCGCCCAACCAAGATGGACAGCAACGACATCCATATTCGGTATACCATAATCCTATACCTGTGTCAATACACGAACACAGCGATCCAAATATTCTGAACCACAGCAACCAAGACTGCATCCCCATAAGTTGA
- Protein Sequence
- MTGHPDSPPQSPSEDAAGCTIGSSERHLENSNAMHTLALAQSPHQPILHHLQNIDNGSVNVNCIETDYALPVPMAPAATPVQVSSISMDPNDPSMMHQDAACGNDSTPDIKVKFETLRSMDQKITLDMDTHMSQQGRNSISSMDSHPSMMLTSELLGLIPGDHDGNNEDIQLNEDSNDLSSDGMLQSSRGLMHGLGTGPKTWSQQDMENALDALRNHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGPSKSWSEGNLHSALQALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPGDLERALHSIRSGHSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYEGDITGGGEPPLQLHPSQEHHNSHQMVQQSGLGHHSVHIQDHPPNQDGQQRHPYSVYHNPIPVSIHEHSDPNILNHSNQDCIPIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00799189;
- 90% Identity
- iTF_00799189;
- 80% Identity
- -