Hano015643.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- -
- Assembly
- GCA_031772345.1
- Location
- CM062839.1:5113823-5116704[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.7 4.6e+02 1.9 1.5 2 20 82 99 81 101 0.86 2 14 0.21 9.7 7.1 0.1 2 20 130 148 129 150 0.92 3 14 0.0011 0.051 14.3 1.8 1 23 154 177 154 177 0.92 4 14 0.033 1.6 9.6 0.2 2 22 290 310 289 310 0.95 5 14 0.27 13 6.7 3.1 1 23 400 423 400 423 0.94 6 14 8.2 3.9e+02 2.1 1.3 1 23 435 458 435 458 0.78 7 14 0.025 1.2 10.0 0.5 1 23 462 485 462 485 0.94 8 14 0.041 2 9.3 0.3 1 23 491 513 491 513 0.97 9 14 4.9 2.3e+02 2.8 0.7 2 23 520 541 519 542 0.88 10 14 6.2e-06 0.0003 21.3 2.0 1 23 550 573 550 573 0.93 11 14 5.5e-05 0.0026 18.4 1.4 1 23 611 634 611 634 0.96 12 14 0.14 6.5 7.7 1.2 1 23 674 697 674 697 0.94 13 14 0.00017 0.0082 16.8 0.1 2 23 704 725 703 725 0.97 14 14 0.1 5 8.1 1.8 1 23 757 779 757 779 0.93
Sequence Information
- Coding Sequence
- ATGTTAGGAATTTATAGTAGAAAGAATACGTTGCGCACACACTTATCTCACGACGAGTTAAAAAGCAGCATAGTCACCAAAGAGCTGAGTGTCGGCATCAGGAGGatgaaattttctggagatctGTCGAACAACTCGCCAAACACAAATAAATTCCTTAAAGATAAACGAAAACTTAAAACCGTTGATACTAAAACACCTAAAGAAAGATTGACAGAATATTCACAGGAGAGACTTTTTATTACATGTTCACATTGTGATGAGAAGGTTTTATCTAAATTATTCAAGAAACATTTAATCGAGTGCAATAAACAAATCACTTGTGTTAAATGCCTttgttataaatcaatttatcgtAATCACTGTCAAACATGTTCACCTGACTTGAATTGTACAAAATGTCTTCTGAAATTCGGCAATCCTATAGAATTAGAGAAGCACACTGAAAAATGCAATGTATTTGCATGTGAACAATGTCCAAAATGTTTTGTAAGCTTTTCAACGCTCAGTATTCATAGATCTGCAAagcacaatttaaaaactggttGTGAAGAAATAGTTTTAAACAACCAAAAAATTGACGACCATAATGTCGTCTGTGAAAGGTGTTCCAATAGTTTTGATAGTGGCACAGTAAGTAAAGGTAATAGATTTATTTGTGCGGAGTGTGTTTCAGTTAATGATAGCGATATTATAGTTGTAACCCAGATATCTTGTTCTGACACGAatgtatcaattgaaaaaacagAAGATGACCCATTGGATATATCTGATAATGATTTTTCTAGTGATAATGAAAATATGCCTTCAGAATCACACATCAATCAAACTGTTGCCAAGTCCCAAACTGAAGATGTAATATCCGATAAATGCCCGCATTGTTCTGAAGCAGTTGTGACGATTTTTAATTAccaaaatcatttgaaaacttGCTCTGAATTGGCAGCTTACATGAAGAAGAAAGAAAAGTTGCAGTCTTCGTTTGGAAAAAGTAAATATTCAGACGGGCAGAGCCAATTTGAAACCGGTAATGACATTGAGGTAAATAAGTCAGTAGCAAAACGGCCGGCTAAAATGAGCTTGTTGAAATCAAAACGAAGTTGGTTGAACGCTCTCGAGAGATACAATTCAGAAATcgatgatttatttgataacatatCATCGGATAGATCCGCTCATCTCAAATCTAATGAAGAATTCACCTGCAAACTCTGTCGTAAAACTCAAAGGAGCCGCAGGTCATTGAAATACCATTTGGATTACGTACACAAAATGAAGATTTTCTTCAATCCTCCGATGCAATATTCATGTAATTATTGTCACGTGGAAAAAATTACTCTGAAAGAAATGAACGTACATTTATATAACAATCATGTTCTCGATTTCAAATGTCGTTATTGTTCAACAGTTTTCGCTTCTACAACAGAAAGAATAACGCACATTGTTTCAGCGCATCCGCAAGAAGCCGGGTACGAATGCAACCGATGCCCTTTCAAGATAAATAATGCAATCCAACTGAGGCAACACACTCTATGGCATTCCAAGCAGGAAATTATCTCGTGCAAAGTTTGCAGTAAGAAAGTCAAAGGTACACTTAAATACGCTTATCATCTCAAATGGCACAAATTACGGTCAGAAAATAACATGTATCTGTGTCCTAAATGTGGGAAACGTTTTACGTCTCGTTCCGGTCTGCGCCAGCATCACCTCAATATACACCGTCCGAAGAAGCTAATTCTGTGCTCCGTCTGCGGTAAACTCGTTACGGAACGTTATATCGCGACGCATCAAAAGCTGCACGGAAAAAACTACAAACAAGAAGATCGGCCGTATCAATGCACCGATTGTCCTCTGTCATTCAAAAGAAAACAGTCGCTTGCGATGCACAACAACCGTCGACATTCCGTGCACTTGACCGTTTGTCGATTCTGTAATTTAGATTTGGTCACTAATCAAGCGTACAAAGAACACAGAGCCGCTTTccacaaaaaacaaaagatgaAAAAATCAGACAAGGGATATCACTGTCCGGTGTGccctaaaattttaaaacacgtCAGTTCTGCTCAGTTACATTTCCTTAAAGCCCACGAACCTCACCGTCACGTCAAATGTGATATATGCCCGAGGACATTTCCGTTGGAGTGGCAGCTTCGGAAACATACGGCGACGCATAACCGTTCCGAAACGGATTCAAATTATGCAAATTTGAAGGGGAAACAATTTAAGACTTCTCGTGGCACTGTCAATCAACCAAATGATAAGAATTTCTTGTGCTCGTATTGTCCGGCAAGGTTCAAGAGACGGAACGCTCAAATTGTTCACGAACATAAGCACACTATCCAAGGGTCaaacaattga
- Protein Sequence
- MLGIYSRKNTLRTHLSHDELKSSIVTKELSVGIRRMKFSGDLSNNSPNTNKFLKDKRKLKTVDTKTPKERLTEYSQERLFITCSHCDEKVLSKLFKKHLIECNKQITCVKCLCYKSIYRNHCQTCSPDLNCTKCLLKFGNPIELEKHTEKCNVFACEQCPKCFVSFSTLSIHRSAKHNLKTGCEEIVLNNQKIDDHNVVCERCSNSFDSGTVSKGNRFICAECVSVNDSDIIVVTQISCSDTNVSIEKTEDDPLDISDNDFSSDNENMPSESHINQTVAKSQTEDVISDKCPHCSEAVVTIFNYQNHLKTCSELAAYMKKKEKLQSSFGKSKYSDGQSQFETGNDIEVNKSVAKRPAKMSLLKSKRSWLNALERYNSEIDDLFDNISSDRSAHLKSNEEFTCKLCRKTQRSRRSLKYHLDYVHKMKIFFNPPMQYSCNYCHVEKITLKEMNVHLYNNHVLDFKCRYCSTVFASTTERITHIVSAHPQEAGYECNRCPFKINNAIQLRQHTLWHSKQEIISCKVCSKKVKGTLKYAYHLKWHKLRSENNMYLCPKCGKRFTSRSGLRQHHLNIHRPKKLILCSVCGKLVTERYIATHQKLHGKNYKQEDRPYQCTDCPLSFKRKQSLAMHNNRRHSVHLTVCRFCNLDLVTNQAYKEHRAAFHKKQKMKKSDKGYHCPVCPKILKHVSSAQLHFLKAHEPHRHVKCDICPRTFPLEWQLRKHTATHNRSETDSNYANLKGKQFKTSRGTVNQPNDKNFLCSYCPARFKRRNAQIVHEHKHTIQGSNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -