Hano015640.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- -
- Assembly
- GCA_031772345.1
- Location
- CM062839.1:5088667-5092362[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2 57 4.7 2.3 1 20 69 88 69 90 0.94 2 17 0.033 1.6 9.6 2.4 2 19 93 110 92 113 0.90 3 17 0.22 10 7.0 0.0 2 19 119 136 118 138 0.94 4 17 0.0063 0.3 11.9 0.7 2 23 144 166 143 166 0.92 5 17 1.3 63 4.6 1.2 3 23 169 189 168 189 0.91 6 17 6.6 3.1e+02 2.4 2.7 1 14 191 204 191 207 0.89 7 17 8.5 4.1e+02 2.0 2.2 1 23 778 801 778 801 0.94 8 17 5.4 2.6e+02 2.7 1.0 1 23 813 836 813 836 0.90 9 17 0.0042 0.2 12.5 1.5 2 23 869 890 868 890 0.96 10 17 0.28 14 6.7 0.7 1 23 896 918 896 918 0.94 11 17 3.4e-05 0.0016 19.0 0.2 1 23 925 948 925 948 0.94 12 17 9.7e-05 0.0046 17.6 0.5 1 23 983 1005 983 1005 0.98 13 17 0.0021 0.099 13.4 0.6 1 23 1011 1034 1011 1034 0.96 14 17 0.48 23 6.0 0.1 2 23 1068 1088 1068 1088 0.96 15 17 6.6e-06 0.00032 21.3 0.4 1 23 1096 1119 1096 1119 0.96 16 17 6.7e-05 0.0032 18.1 0.5 1 23 1125 1147 1125 1147 0.98 17 17 0.19 9 7.2 5.5 1 23 1153 1175 1153 1175 0.96
Sequence Information
- Coding Sequence
- ATGCTTCTTTTGACTTCACTGTGTTGCCCACTTTCCAGATTACGACGACAAAACGTAAGGATTCGCGAAGAAATTCCCGACGGCGACCCGTTGCGGTTGTCATCGGACAGCGAAAGTGACGGGTCATCGGAGGTTTGGGAACCGTCACGAGACGAAAAAATGTCTGAAAACCAAGACGATGAGAACGAATCCGACTGCAGCGATTACACGTGTACCTGTTGCAGTAAGGAATTCTCAAGTGTAACATTGTATCAGACGCACCAGAGCGAGCAATTGTCTTGCACTAATTGCGATAAAAGGTTTTGCAATAAAGAGGAATTCGACGATCACTCTTCGACCTGCCCTACCGAATTAATCTGCGAAGTGTGCCAAGCTAAATTCTATAGCCCGACGGCGTTGAAGGAACATAACGATTTTTGCAGTGCACTCACGTGCAATGTTTGTCAGATGAAATTCGTAAGTTTGGGCGACCTCAAAACGCACAAATCTTTGAGGCATAAATTCTGTAAATATTGTAAGGGATCGTTCAGTAACGAAGGCTTTGCAAGGCACAAGTTAATTAAACACTTCTTTAAATGCGGAAAGTGCTCTTGTCCTTTCACAACCAGTGTTGGTTTTCTCGAACTCAAAGGAATCCCAAAATTATGCGTGGCATGCCTCGTGGAGTCTAAATCGAGCcatataataattgctaaaaatgCATCTCCCGCAGATAGCTGTAGCCCCGAAACGAAAACTGCAAGTGAAAAAAACGTCCCGCCCGAGGATGGAACTGATAACGTACGGAATCCTAGACGACCGGATGCGGAAGGTGAATCCGCAAAAGCAAAGTGTGCCACTTCTTTAGAACTATGTTACACTGTTGAAGCTTTTCAGTCGGCCAGCGAAACTGGGCGGTGCCCTTACTGCTTAAAAAAAGTTCCAAACAATATGGAATGTCATATGAAGATATGTGTTCAGGTGTGTAATTACATACGCAAGACAGGATCGACTAAAGGTTATAAAAATTGCTTTATAGCCAAGGAAGTAATCAACGACAGCGTGGATGGCAACAATGCAAACAGTAACAATGCAGATATTTGCGTCAGTAACAAACCAGTGAGTGTTCCTAAACTCAATAAGGATACAGTCAAAGGCAATGCGATTGCcgtcaataatgaaataaaatcatttctgtTTGAGGAAGTAATTAGCAACAGGGAAGAGGATAGCGACCGAATCGTAATAAATTCTGATATTTGCGTTGTGGCCAGCACCTATACACTCGGTAGCGAACCAGAGGGAAACAATTCGGTGAGTGTCAATGAAGTCATAGATACAACTGAAAACGATGTAATCACTATCGACGAAGACAGCGACGGTGAGGATGATAACAATGAAGGTAGCAACAATACTGATTATAGCAGacagattagaaaaaaatctgatatttgCGTTGCGACCGGCAACCATAAAGTTAGCGACAAACCAGAGAAGAACAATTCGGTGGGTGTCTCTGAAGTCAATGACGCAGCTAGTGGGAGTGTGATCGCAGTGGATGAAGTCAGCGCTGGTGAGGTTGATAACAATCAAGGTAGCGTCAATACTATCAATAGCAATCAGGTCAGTGAAAATTCCAATATTTCTGTTGCTACCGGCAGCTATAAAGTTGGTCACAAACCAGAAAGGAACAATTTGGTCAGTGTCTATGAAGTCATTGATGCAGCGGACAGTGATGTGATCATTGTGGATGATGATAGCGACGTTGAGATTGATAACAATGGAGGCAGCATTAACAATAACGATAGCCATCAGGTCAGCTATAAGTCCGATATTTGTGTTGCAACCGGCACCCTTAAAGTTAGTGACGAACCGGAGAGGACTAATCTGGTGAAAGTCTATGAAGTCAATGATGCAGACACTAGGGACGTGATCACAGTGGATGAAGTCGACCACAGTGGGGTTGATAACAATCAAGTCACCATCAATACTGGCAATAGCAATCAGGTCTGCAAAACTTCTGATGTTTGCGTTGCCGTCAGCGTCCATACGGTAATCGACAAACTCGAGAGGAACAAATTGGTGAGTGTCTATAAAGTCAATAATGATCCCGTCAGCATCGACTCAGCCAATAGCGATGTGATACTAGTCAACGAAGTCGATAAGGATTCACTCAGCGTCGACACGGGAAATAGCAATATAGTCATAGCAGTAAGCGATGACGCAGTCAACAGCAATGCAGTTTGCGTCGAGAAAAAGAAAAGAGTCGTCTGGTCCAACGCTCTGGATAGATACGGGGAGACCGTCGATAAAATTTTTAACACCATGTGGATGCGGCCGAATTGGAATTGTCATAACTGCCAAATCTGCGGAGTCCGTATGAAAAGTCTTCAGGTGTACCGATtgcacttgaaaaaaaaacacggcaTGGCTTCGCTGCTCGACAAAATACAGCGCTTCCGCTGTAACGAATGCCGGTGCCGAGGGGACTCCCTCGAAGATGTAAATTTGCACATTTACAACCTACACGAGAGGACCATTCAGTGCAGCGAATGTTCGCACCTTTCCATCAGCCATAAAGAAAATAAGCTGCATCTCCACACAGTTCACCCCGAAAGCGTCAACAAGTGCGATCAGTGTGACTCCAAGTTCTCAGATTCTATGCAGCTGAAACTCCACCGTAACGACCACTACACTAATGATGTTTTCGATTGCGATGTGTgcggaaaaaaaattaagggtaaattaaaattctccTCACACCAGGCGTATCACAAGCAACGGCATAGGAGATATTTGTGCCCCTTCTGCGGCAAGATTTTCAATGATTTGAAGAATCTTACGATGCACGTTCGTGCTATGCACCTACACGAAAAATCCAAGATGGTTCTTTGCCCAGATTGCGGACTTTTACTCAAAAAACGCTCTTACGCCAGGCACTGGGAAAAGACACACAGCGGAGTTCTTTACCCTTGCACGGTGTGCTCCAAAAATTTTCCCACTCGCATAGGTCTCAAACAGCACCGTTTGACTCACGTGATAGGCCGCAACTATCGCTGCGACTGGTGCCCTGCCGCCTACAAGCAGCTGAAGAATCTCAGATACCACAAGAGCAAAGCTCACTCGACCACGAATCCGCCGAAGAGTATTCGGGAACCGAAAAGCAGTACTCCGCCGACGAAAAAAGGACCGCCGGCAGAGAAGAAACCGAAACAGCCGGCGGAATGCCCTGTGTGTTTGCAGAAATTCCCTCCGAACCGTCTGAACCGTCACTTAGCGACTCACGGGGTTTATAACCCGGCTCATTTCCGCTGCACTAAATGCGATGAGAGTTTTTCTTCGGCGGGATCGCTCAGGAACCACGTCAAATGGATCCATTTAGGAGAAAGGAATTTTCCCTGCTCGTACTGCTCCGCTAAATTCAAGAGAAGAGATGCACTGGTCATACACGTGCGGCGTCACACTGGCGAGAGACCGTATAGCTGTGGAGTCTGTGACCGTCGGTTCCGTCAGCACACCGATTGTAAGAAACACGAGGCAAAACATGCCCTGCCAGACTTCCGCTGTGACAAATTAGAACAGAGTCAGTCCTCCAGCGCAGGCTCTGTTGAAGAATTCGATAAAAATTCTCCCAGTTATGAATCAAATTATGCTGTCTCTGAAGAGGACATACAAGCTGCTGCTGTTCTCAGTCGTACACATACAGATTTTACATGA
- Protein Sequence
- MLLLTSLCCPLSRLRRQNVRIREEIPDGDPLRLSSDSESDGSSEVWEPSRDEKMSENQDDENESDCSDYTCTCCSKEFSSVTLYQTHQSEQLSCTNCDKRFCNKEEFDDHSSTCPTELICEVCQAKFYSPTALKEHNDFCSALTCNVCQMKFVSLGDLKTHKSLRHKFCKYCKGSFSNEGFARHKLIKHFFKCGKCSCPFTTSVGFLELKGIPKLCVACLVESKSSHIIIAKNASPADSCSPETKTASEKNVPPEDGTDNVRNPRRPDAEGESAKAKCATSLELCYTVEAFQSASETGRCPYCLKKVPNNMECHMKICVQVCNYIRKTGSTKGYKNCFIAKEVINDSVDGNNANSNNADICVSNKPVSVPKLNKDTVKGNAIAVNNEIKSFLFEEVISNREEDSDRIVINSDICVVASTYTLGSEPEGNNSVSVNEVIDTTENDVITIDEDSDGEDDNNEGSNNTDYSRQIRKKSDICVATGNHKVSDKPEKNNSVGVSEVNDAASGSVIAVDEVSAGEVDNNQGSVNTINSNQVSENSNISVATGSYKVGHKPERNNLVSVYEVIDAADSDVIIVDDDSDVEIDNNGGSINNNDSHQVSYKSDICVATGTLKVSDEPERTNLVKVYEVNDADTRDVITVDEVDHSGVDNNQVTINTGNSNQVCKTSDVCVAVSVHTVIDKLERNKLVSVYKVNNDPVSIDSANSDVILVNEVDKDSLSVDTGNSNIVIAVSDDAVNSNAVCVEKKKRVVWSNALDRYGETVDKIFNTMWMRPNWNCHNCQICGVRMKSLQVYRLHLKKKHGMASLLDKIQRFRCNECRCRGDSLEDVNLHIYNLHERTIQCSECSHLSISHKENKLHLHTVHPESVNKCDQCDSKFSDSMQLKLHRNDHYTNDVFDCDVCGKKIKGKLKFSSHQAYHKQRHRRYLCPFCGKIFNDLKNLTMHVRAMHLHEKSKMVLCPDCGLLLKKRSYARHWEKTHSGVLYPCTVCSKNFPTRIGLKQHRLTHVIGRNYRCDWCPAAYKQLKNLRYHKSKAHSTTNPPKSIREPKSSTPPTKKGPPAEKKPKQPAECPVCLQKFPPNRLNRHLATHGVYNPAHFRCTKCDESFSSAGSLRNHVKWIHLGERNFPCSYCSAKFKRRDALVIHVRRHTGERPYSCGVCDRRFRQHTDCKKHEAKHALPDFRCDKLEQSQSSSAGSVEEFDKNSPSYESNYAVSEEDIQAAAVLSRTHTDFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -