Hano017606.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- -
- Assembly
- GCA_031772345.1
- Location
- CM062841.1:16309748-16318259[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.18 8.4 7.3 0.2 1 23 394 416 394 416 0.95 2 10 0.19 8.9 7.2 4.7 1 23 423 445 423 445 0.92 3 10 0.012 0.58 11.0 0.6 2 23 450 471 449 471 0.96 4 10 0.013 0.62 10.9 4.7 3 23 480 500 478 501 0.94 5 10 0.0012 0.055 14.2 2.2 1 23 508 531 508 531 0.97 6 10 0.00019 0.0092 16.6 0.3 1 23 537 559 537 559 0.97 7 10 0.0006 0.028 15.1 0.7 1 21 565 585 565 590 0.93 8 10 0.00098 0.046 14.4 1.9 1 23 598 621 598 621 0.95 9 10 0.0046 0.22 12.3 0.7 2 23 628 650 627 650 0.94 10 10 8.5e-06 0.00041 20.9 1.9 1 23 659 681 659 681 0.97
Sequence Information
- Coding Sequence
- ATGGCCTTATCATCTAATAAACTAAAAGAATTTAGGAATAATGTATGCAGAGGATGTCTGCTCGTTTCTCCCACTGAATTCTCCACTGTAGACGAGAGGCTTCAATATTCCTTTACAGAATTGTCCGGGATTTATctTCTAAAGAACGGCAATCTTCCACATCGTCTCTGCAGCAGCTGCGTAAAGTCAATCAAACAATCTGTGAAGTTCAAGAACCAATGTTTCACATCCAACAAGATTCTATCGGAACTTTTGCAAAATAGCCTCAATAATTTTACTGGACAGTTTGACCTGAATGATCTACGTCagaaaagaaacaattttttaaccCACTCCAATACGCTGACACTGTCCAAAACTTTGACCGTAGAATGCCTTGACAAAAATGCCCTTGACAGAATTGAGCAACCGAAAACATTCAGCAATAGTATTAAGGCGCCCAGTCAGATTCCTCCAGATCTTTGTCCGGAGGTCGTTAATCAGACATTGAACCTCGTAAGCCACGACGGGAAAACCCTACCTGGATATTTTATCGATAGCGATGATGGATTACGACACGATGGAGATGTTAACAAACCCTGCCcggaaaatatttacaatgaagtgtctcataaattatacatattcgATTCATTTTTTCCCGAATCTAGCTTACAGAATAACTCTGACGTAGATCAGTGTTGGAACAATGAACTCTCTGTTAAAAAAGAGTTCAATAATTCTTCATATATCGAGGTTTCCAAAGACGACGACGTTGATGATGACGATTTTGACAGAGACGCAATGTCACCGGATATCAAAGAAGAATCACAAGACGCCATCAAGAGAATCACAACAAAAACAAGAagaaaatcgcacaaaaaataCACTGAAGATCCTGATGACGATATTATTCTCAGTCAATTGGAACCGTCGTCGTTTAAACGGAAACGAAACGCAGTATACCGATACGAGACGTCGCAGAAGTCGAAAACAAAAGATAGCGGTAATTTGAaagttaaaaaacataaatcttcCAAATTGAAAAAGTCCAGCGTGAAGAAAACAATGAAGAAAGATGTGCCCGttataaattgtcattttgacGAGAGCAGCGTCAATATTACAAAGCTCAGTGTGGAGGAGCAGCTCACCGACTTGGAGGAGGCCAGGAAGACTAAGCAGTATTTAGAGGGGCCGTTCAAATGCGTGCCGTGTGCAAAGTCATTCTCCTACGAAATTACTTGGCAAGCTCATCAGGTCAGGCATCAAGAGAATGCCGGTACATACCTGTGCAAAATATGTCATCAGCGCTACACGACTCCCAGAAGTCTCCAATGCCATTCTCAGATCCACGAAGAGAGGCTGGAATGCAAGATATGTCTGAAGGTTTTGAGCGGGAGATCACATATGGCCAAGCATGTCGCCAAGCACAAAGGAATCTCGCAGTCCATCGATTGCACTATATGCGGAAGCACTAGCACATCTAGAAGTAATCATAAACGCCATATGCAGACTCATCACACTTCAGGACCTAAACAGCACAAGTGCCCATACTGTCCGAGGGATTTTAACCACACCGCAAATAGAAATGACCATATTCTCCGAGCTCATACGGGTCAGAAGAACTTTGCGTGCGACGTCTGCAAGGCCACGTTCGTGAACAAGACGGCTCTGAAGTCACACGCCAACAAGCACTCCCAGCAGAGAGACTTCTACTGCGTGGAGTGCGACAAGAGCTACAAGACGCGCCTCTCCCTCATCAGCCATTTGAACATCTCCTCCAAGCACGCCAACCCCGCCTACCTcaaGTTCCAATGCAAACAATGTGAAAAACGATACGACACGCAACGCAAACTGAATCTGCACGTAGACTCGACGCATCTCCGGCTGCTGAAGTGGTCCTGCGAGAAATGTTCAGCCATATTTAGAACCGTCAGCGGCCTGAGACATCACAGAGCTCGGATACATGAAGGCAAAGTGAGCCTGAAGAATCATATGTGCGACACTTGCGGCAGAGCTTACGCAtcgaAATACAAACTGAAGGTTCACCTCCGCACTCATACCAGCGATCGACCGTACGCATGCGACTAA
- Protein Sequence
- MALSSNKLKEFRNNVCRGCLLVSPTEFSTVDERLQYSFTELSGIYLLKNGNLPHRLCSSCVKSIKQSVKFKNQCFTSNKILSELLQNSLNNFTGQFDLNDLRQKRNNFLTHSNTLTLSKTLTVECLDKNALDRIEQPKTFSNSIKAPSQIPPDLCPEVVNQTLNLVSHDGKTLPGYFIDSDDGLRHDGDVNKPCPENIYNEVSHKLYIFDSFFPESSLQNNSDVDQCWNNELSVKKEFNNSSYIEVSKDDDVDDDDFDRDAMSPDIKEESQDAIKRITTKTRRKSHKKYTEDPDDDIILSQLEPSSFKRKRNAVYRYETSQKSKTKDSGNLKVKKHKSSKLKKSSVKKTMKKDVPVINCHFDESSVNITKLSVEEQLTDLEEARKTKQYLEGPFKCVPCAKSFSYEITWQAHQVRHQENAGTYLCKICHQRYTTPRSLQCHSQIHEERLECKICLKVLSGRSHMAKHVAKHKGISQSIDCTICGSTSTSRSNHKRHMQTHHTSGPKQHKCPYCPRDFNHTANRNDHILRAHTGQKNFACDVCKATFVNKTALKSHANKHSQQRDFYCVECDKSYKTRLSLISHLNISSKHANPAYLKFQCKQCEKRYDTQRKLNLHVDSTHLRLLKWSCEKCSAIFRTVSGLRHHRARIHEGKVSLKNHMCDTCGRAYASKYKLKVHLRTHTSDRPYACD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00801245;
- 90% Identity
- iTF_00801245;
- 80% Identity
- -