Hano017513.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- Znf518a
- Assembly
- GCA_031772345.1
- Location
- CM062841.1:13395999-13401517[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.55 26 5.8 2.4 1 23 292 314 292 314 0.98 2 11 0.0021 0.1 13.4 0.3 1 19 321 339 321 343 0.94 3 11 3.9 1.8e+02 3.1 1.2 2 23 348 370 347 370 0.92 4 11 1.3e-07 6.2e-06 26.6 1.2 1 23 377 399 377 399 0.98 5 11 0.0052 0.25 12.1 2.2 1 23 407 430 407 430 0.90 6 11 0.00095 0.045 14.5 0.8 1 23 437 459 437 459 0.97 7 11 0.00072 0.034 14.9 2.3 1 22 465 486 465 490 0.93 8 11 0.0021 0.098 13.4 0.8 1 23 497 520 497 520 0.97 9 11 0.13 6.1 7.8 0.4 1 23 526 549 526 549 0.97 10 11 1.3e-05 0.00059 20.4 0.9 1 23 558 580 558 580 0.97 11 11 5.6e-05 0.0027 18.3 1.3 3 23 588 609 586 609 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTTGAGAAAGAAAAAGTTTGCAGAGGATGTCTGTTGGTGTCAACTGCAGAACTTTCACAAACTCATTACGAGACTCTAAGCTCTTTCACAGCTATATGCGGGTTAACTtttaaaattgaagaactCTACAATAAAAGAAGTAAACAAATCTACGAGACACATCCCTTGGAGCTGGCACAACTATCAACCATAAAGTGCtcacaaagaaataatatttttaatagcagTATTAATTCATCTCAAAATTCCATATTTACCTCGGCCGCAAAACTTAATCTAAATGATAGCGAGAAAAGACTGAACAGTGATGTTGATCAATTGACACAACATCCAACGACTGGTTCGACTGAAATAAAAGATATCGAATGGAACCAAGAGCTTTGCTCTGTTGATGATTTCAACAATGGTCCACCTCCGTTGGTTTTTTTTGACAGCGATGATGAACGACATAAAATAGATTGCTTGcctattaaaaaagaattggaACATGTATATGAATGCTTTGATAGCCCTGCGTCGATTGATATAAAAGAAGAAATCATAAATGTCACTAATGAAACATTAGTTGAAGATTTACTGGCAAATAGAAAAGGGAGCGatcttaaaaagaaatgttttaaattgaaaataaaccagaaaaacaaaaaatctaatataCGATGTATAGCAATTGACAAAttaaaaggaaaattaaatGAGAAAGTCGATAAGGCACGCGTTGGCGCAGATGAGAGAACTAAACGAAAACACCGTGTCAGTAATTACAGTTTTGATAAGTCTGCTGTCAATGTCAATAAACTGAGTTATCAGGAACAATTGTGTGCTTTGGAGACTGCTAGAAATAGAGTGGAATACTTGGAAGCTCCATTCAAATGTAAACcctgtgccaaatattttgtacatgAGCTCAGCATGCAAGGACATATGAAGAGGCATGACGAGTCTGCTGGAAAATATATCTGTAAAATTTGCACACAGCGCTATTCATCTCTGCGTAATCTTCAATCTCACGACGCGATCCACAGAGAAAGACTTCAGTGCAAGCAATGTTTACAGGTCCTTTGCGGACGTGTTTCGATGGCGAAACATATTGCACACGCCCACAATGGCTATTACGCCACATTTGAATGTGACATATGTGGAAAGGTGGCCACAAGTAAACATAACCTCAGACGGCATATGCTGACGCATAGTACGAGCAAAGACAACAAATGCAAATGCCCATATTGTCCCAAAACATTTTCTCTCTCAACAAGTAGGAATGACCATGCCACTCGTGCCCATTCTAAAGGCGAAAGATATTTCccatgtaaaatatgtaaacgCAGTTTTTTGAACAAAACTCTCTTACGCTTGCACGCCATTACGCACTCGGACAAGAAAGATTTTTACTGTGTGGAATGTGATATGCACTTCAAGAGAAAAAACTCTCTCGatcgtcatttgaaaatatcCATGCGACACGGTAACCAATCTTCAAGGTTCAAATGTGATCTATGCGAAAAACGCTACGACACACCGCTCAGACTGAAAGAACATTTGAACAGCTCGCATTTCcgtgtatttaattttacttgcgACAAGTGCCCGTCTAAGTTTCTCACCGGCGGCGGTCTGAGGATCCACAGACGGAAAATTCACGAAGGAAAAGTGGAACCGAAGAATCACGTTTGCGGCGTGTGCTCGAAAGCGTTTCAAtctAAGAATTTGCTCGTCAGACACATGAGAATTCACACCGGGGAACTACCATACGGCTGTCATGTTTGTGATAGACTATTTCGTCAAAAATCCACATTGGAAACTCACATCAAGTTGGTACACCTGAAACTCAAGCGACCGTTTGGAAAACACAACAGAATGACAGACACGAAATAA
- Protein Sequence
- MSVEKEKVCRGCLLVSTAELSQTHYETLSSFTAICGLTFKIEELYNKRSKQIYETHPLELAQLSTIKCSQRNNIFNSSINSSQNSIFTSAAKLNLNDSEKRLNSDVDQLTQHPTTGSTEIKDIEWNQELCSVDDFNNGPPPLVFFDSDDERHKIDCLPIKKELEHVYECFDSPASIDIKEEIINVTNETLVEDLLANRKGSDLKKKCFKLKINQKNKKSNIRCIAIDKLKGKLNEKVDKARVGADERTKRKHRVSNYSFDKSAVNVNKLSYQEQLCALETARNRVEYLEAPFKCKPCAKYFVHELSMQGHMKRHDESAGKYICKICTQRYSSLRNLQSHDAIHRERLQCKQCLQVLCGRVSMAKHIAHAHNGYYATFECDICGKVATSKHNLRRHMLTHSTSKDNKCKCPYCPKTFSLSTSRNDHATRAHSKGERYFPCKICKRSFLNKTLLRLHAITHSDKKDFYCVECDMHFKRKNSLDRHLKISMRHGNQSSRFKCDLCEKRYDTPLRLKEHLNSSHFRVFNFTCDKCPSKFLTGGGLRIHRRKIHEGKVEPKNHVCGVCSKAFQSKNLLVRHMRIHTGELPYGCHVCDRLFRQKSTLETHIKLVHLKLKRPFGKHNRMTDTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -