Hano004843.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- -
- Assembly
- GCA_031772345.1
- Location
- CM062825.1:343888-350456[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.3e-05 0.003 18.2 1.5 3 23 13 34 12 34 0.95 2 11 0.0031 0.15 12.9 3.1 2 23 50 72 49 72 0.94 3 11 1.2 56 4.7 8.8 1 23 109 132 109 132 0.97 4 11 0.0018 0.087 13.6 1.4 1 23 141 164 141 164 0.95 5 11 0.00012 0.0055 17.3 0.2 1 23 265 288 265 288 0.98 6 11 0.0017 0.082 13.7 1.0 1 23 300 323 300 323 0.94 7 11 0.0018 0.084 13.6 1.2 2 20 331 349 331 350 0.95 8 11 0.00016 0.0078 16.9 3.2 1 23 358 380 358 380 0.98 9 11 0.00081 0.038 14.7 3.6 1 23 385 407 385 407 0.98 10 11 0.0019 0.091 13.5 2.3 1 23 413 435 413 435 0.97 11 11 0.00027 0.013 16.2 5.0 1 23 442 464 442 464 0.98
Sequence Information
- Coding Sequence
- atgattacgaattacgaaatattagATCCTCATGGCTGTGAATTGTGTgggaaaacatttaaaaataaaaaaacattaaaagatcacaataaaaatgttcatcTTGCACAATGCAACATTCGAAATGAAAGACATTCAGTGCTATGGAATTGCGAGACATGCCTCAAAACATTCAAACATTTGGAAAACTTTACAGAACATCAAGATAAGAAACATAATCAGAGAAAATCATTTGTTAGCAATTGTGAATCAGAAAGTGTAGCTGACTTGCACATTTCCAATAggcatattgaaaatattccagAAACAacagataaaaaatcatttaaatgcgaaaaatgttttgaaacttttcattcatataaatgtatgaaGTCACATTTTAGAATCCAACACCCAAAGACAAAAAAGACATAtccatttaaatgtaaattatgcaaaataggttttaaaaaattgactgcTCTTCTAAGGCATACTTATTCTGTtcataaagtgaaaatattaactaaaaacacatttatttctaataagGGTAACAAAGATTCATTTAATTCACAATTAGACATCGAGCAGGAATCATTGCAGTCAGTGGATAGCAAATTAGTTGTTGCAAATAGTACATCGATATTGACTAAAGATTGTACGGTTGCCGGAAGGCAAAAGAAATCAGATCTATTAGAATCACAAAATGAAACTGCAATCAGCAAAGGAAGACTTGAGAGGGACCCGTTCCGATACCAATTAAACAGAATAACAGTCACAGTAGAAGGTGGagaaaatttagatttataCAAATGCGACAGGTGTCCGAAAGTTTTTGCGATCCAAAAGAGTTTGGCCGACCACGAGAGGCGAGTTCATCTCAAATCGAATCTGAACAACCCAGACTATCCCTTTATTTGTAAGCCATGCAAAAAGGGTTATAGACGAAGTAACGACTTAATGAGACACGCTAGGTTGTATCATAAGGTCATCATAAGAAACAACAGATGTGTCACCTGTAATACACACTTTTCTAATCAAGGAATGCTGAAGAAACATCAAGTTTGTCATACAAAGGAGCGGCTGTATATTTGTCCTGTCTGTACCAAAACGTACATGCAGAAACATCACTTGGTGCAACACGAGCTCACGCATGGCGATAAGAAGCATAAATGCCCTCACTGTCCGATCGCCTGTTTCACTGGAAGTCAATTAAACAGCCATCTGAGGATACACTCCGGAGACCGTCCCTTCAATTGTCACTTCTGTCCTGACACTTTCAAGCGAGCACAAGCATTGCGACAACACGAACgatTGCACACAGGAGAAAAATCAACATACCACTGCAGCAGTTGCGATCGCTGTTTCAGATCTTCCAATGGACTTGCGCGGCACGAAAGATCTCATAGGATTGGAAGAATTGCATCAAGAATCTCACAAGATCATGCCTCACCTCTTAACGCACTACAGCAAACAGACACTGTTGAAAATGCAGCTAACCATTATGGAACTAATTTGGAAACTGAAGTCCAGCGTAATATTCTGGCAGCGCAAGAAGCCGCTAGTTTGTTGCAGtcgaaaattaacattttagtaTTGCGGtga
- Protein Sequence
- MITNYEILDPHGCELCGKTFKNKKTLKDHNKNVHLAQCNIRNERHSVLWNCETCLKTFKHLENFTEHQDKKHNQRKSFVSNCESESVADLHISNRHIENIPETTDKKSFKCEKCFETFHSYKCMKSHFRIQHPKTKKTYPFKCKLCKIGFKKLTALLRHTYSVHKVKILTKNTFISNKGNKDSFNSQLDIEQESLQSVDSKLVVANSTSILTKDCTVAGRQKKSDLLESQNETAISKGRLERDPFRYQLNRITVTVEGGENLDLYKCDRCPKVFAIQKSLADHERRVHLKSNLNNPDYPFICKPCKKGYRRSNDLMRHARLYHKVIIRNNRCVTCNTHFSNQGMLKKHQVCHTKERLYICPVCTKTYMQKHHLVQHELTHGDKKHKCPHCPIACFTGSQLNSHLRIHSGDRPFNCHFCPDTFKRAQALRQHERLHTGEKSTYHCSSCDRCFRSSNGLARHERSHRIGRIASRISQDHASPLNALQQTDTVENAANHYGTNLETEVQRNILAAQEAASLLQSKINILVLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -