Hano015641.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- -
- Assembly
- GCA_031772345.1
- Location
- CM062839.1:5093945-5098089[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.036 1.7 9.5 0.0 1 20 70 89 70 91 0.93 2 18 0.02 0.96 10.3 2.3 2 20 94 112 93 114 0.92 3 18 0.27 13 6.8 0.1 1 19 119 137 119 140 0.91 4 18 0.0021 0.098 13.4 0.8 1 23 144 167 144 167 0.95 5 18 4 1.9e+02 3.1 2.4 2 23 170 191 169 191 0.89 6 18 0.13 6 7.8 0.3 1 16 193 208 193 210 0.88 7 18 2.6 1.2e+02 3.7 0.5 2 21 301 320 301 321 0.92 8 18 0.00049 0.023 15.4 2.7 1 23 413 436 413 436 0.96 9 18 0.05 2.4 9.1 3.2 1 23 475 498 475 498 0.97 10 18 8.5e-05 0.004 17.8 2.6 1 23 504 526 504 526 0.97 11 18 6.8 3.2e+02 2.3 1.0 3 19 534 550 532 554 0.84 12 18 0.001 0.05 14.3 0.0 3 23 566 587 565 587 0.97 13 18 0.008 0.38 11.6 0.8 1 23 623 645 623 645 0.98 14 18 0.0012 0.055 14.2 2.1 1 23 651 674 651 674 0.97 15 18 1.4 65 4.5 0.1 2 23 701 721 700 721 0.93 16 18 7.4e-05 0.0035 18.0 0.3 2 23 729 751 728 751 0.94 17 18 0.0036 0.17 12.7 0.7 1 23 757 779 757 779 0.98 18 18 0.18 8.8 7.3 3.4 1 23 785 807 785 807 0.96
Sequence Information
- Coding Sequence
- ATGCCGAGCTCATATCGAGAGTGTGGACGAAACATTTCGAAGCTCCTACCTATTTGCAAAGAAGAAATTCCCAATGAGGAGCCGTTACAATTGCCAAAAGACAACAAATGCGGAATACCTTCAGAGGCTTCTGAAACATCACCGCAGAAACCGCTTGCAGAAGGTCAAGACAGTCAATATTACGAGAACGGACAAGACACGAGCACGTATATATGTACCGTTTGCGATGAGGAATTTTCAGTACTCGCGTTGTACCAGATGCATTTagcaaaacaattaatttgCACACATTGCGACAAAAGGTTTTGCGTTgagataaaattaaacaatcacAGATCTAATTGTCTATCTGATTTCAACTGTAAAATGTGCCAGGCTAAATTCAACAACGCGCCGGCATTAGATGAACACGAAAGCTCGTGTTCCGTATTCTTTTGCAATGTTTGTCCAAAGCGTTTCATAAGCCTCGCCTTTCTGGAGTTGCACAGATCCTCGAAGCATACTATTCACTGTAAATTTTGTAAGAACACATTCGATGAAGACAGTTTTGAAAAGCACAAGTCTGCTGAACACATGTTCGTTTGCGAAAAGTGCTCACGTCCGTTTACCACGAATATTAGTTTCATCAACAGCACAGAAGGCGCAATATTATGTGTCACGTGTCTGTCGTTGAACGTGTCTCGTATAAAAATTACTAAACATGTATCTTTTGCGAAGAATCATGatctcaaattaataataaaagaagaaCACAAAGTTTTAACTGAGAACGACAAGTGCCGCTTAATAAAACCTGCGGAATACGTATCTGGAGGTCAACCTCCACGCGTTAAAAATGATCATACTTCTTCAGAGCCTCTTCAGTCTTCCGAAGTATTACAATCTGTCAGCAAAACTGGCAGGTGCCCTTACTGTTCTGACAAAGTTGATAAGATGGTTAATCTGCAACACCATCTTAAGTCATGTTTTGAATTGTGGCAGTACATGAAAAAAAAGGCAGGAACGGGGGCAGAGGTAAAGAATGAACAAATAACCGAGTATCGCATTGAAGATCTCCCGGTTAACCTGGAAGGAGAGCTCACTAAAAATTACACCTCCAATGAAATAGTCAATGCGGTCAGCATCGTCAGTGAAATAAAGGAAGAGAACTTTTGGTCTAACGCCCAAGAGCGATACAGTGAGgttgttgataaaatttttaatgtcatGCGTGCAAAGCCTGTTGACAATTTCGATCACATTTGCGAAATCTGTTCAAAAGTTTACAAGTCTCTGAAATCTTACAAAAATCACATAAACCGATATCATGGCATGGCATTGCTATTTAAAAATCCACAGCGCTTCCGCTGCAACTGCTGCCGCTCTGGGAGAAATTTCCTGGCAGACATGAATCGGCATCTGTACGACCGACACGAAGACATCTTCCAATGCGACCACTGTTCGGAAGTTTGCTCCTCGCGGACAGAAAgaagtattcatattttcacCGCTCACCCTGACCGTCCTGCGCACGAGTGCAACCAGTGCAGCGCCAAGTTCTCCAACAGGGAGCAGCTGAAGACTCATCTCCGCTGGCACTGTCACGATGAACTAATCGATTGCAACGTGTGCGGAAAACAGATCAAGGGCAAAAAGAGATTTGCCCATCACGACAGTTATCATAAGACTCGAGTCAAGGAAAACGATGTTAACCTGTGCCCCGAGTGCGGAAAAAGCATGAGCACTCTGGCCGGTCTCAGGGCCCACGTCCGATATGTCCACGGCGACGGTAAGACCATGACCGTACTCTGCCCGGATTGTGGACTGCTCGTCAAGGCGCGCTGTTATCCTCGACACCGAGAGCGGATGCACGGCGGCGGAGGCCTCCACCGTTGTCCCGTGTGCTCGCGGGGATTTCTAGCCAAGGAACTCCTCCGTCAGCATATGGACACTCACGCTCGAGGCCGCCCCTACCGCTGCGATCGTTGCCCCTCGGCTTTCAAGCAGCTGAGGAATCTCAGAATGCACAAGCGCAATCGTCACTCTGCCGCCGCCATGCCTAAGCGGAATCCCGCAGCGGAGGGGGGACCTCCAGCAGAGAGAAAACCGCGCCCCCCAGTGGAATGTGCTGTGTGCTTGCAAAACTTCCCGCCACGCCGTCTTCGCGCTCACATGGCGACGCACGAACCTCCCAAGCCTGACGTGAGCTGCACTCAATGCAACAAGACTTTCACCTCGGCGGGATCTCTCAGCAGTCACGTCAAGTGGGTTCACTTGGGTGACAGAAATTTTCCGTGCTCTTATTGCTCGGCAAAATTCAAGAGAAGAGATGCGCAGGTGGTGCACGAACGACGTCACACCAATGAGAGACCTTACAGCTGCGGAGTATGCAACCGCCTCTTCCGTCAGCGCACCGATTGCAAGAGGCATGAAGCAAAACACGCTCTGCCCGGCTTCCGCTGCGATAGACGCAGACGTGACCAGCCGGCCAGTGCAAACTTTATGAAAGAATACGATGAAAAATCAGCCTCTGCTGAATTTGAAGAGACAACTGCCTCCGGAGAAGACCATCAGGCTACCACCTATCTtagttatattgttaaaaattga
- Protein Sequence
- MPSSYRECGRNISKLLPICKEEIPNEEPLQLPKDNKCGIPSEASETSPQKPLAEGQDSQYYENGQDTSTYICTVCDEEFSVLALYQMHLAKQLICTHCDKRFCVEIKLNNHRSNCLSDFNCKMCQAKFNNAPALDEHESSCSVFFCNVCPKRFISLAFLELHRSSKHTIHCKFCKNTFDEDSFEKHKSAEHMFVCEKCSRPFTTNISFINSTEGAILCVTCLSLNVSRIKITKHVSFAKNHDLKLIIKEEHKVLTENDKCRLIKPAEYVSGGQPPRVKNDHTSSEPLQSSEVLQSVSKTGRCPYCSDKVDKMVNLQHHLKSCFELWQYMKKKAGTGAEVKNEQITEYRIEDLPVNLEGELTKNYTSNEIVNAVSIVSEIKEENFWSNAQERYSEVVDKIFNVMRAKPVDNFDHICEICSKVYKSLKSYKNHINRYHGMALLFKNPQRFRCNCCRSGRNFLADMNRHLYDRHEDIFQCDHCSEVCSSRTERSIHIFTAHPDRPAHECNQCSAKFSNREQLKTHLRWHCHDELIDCNVCGKQIKGKKRFAHHDSYHKTRVKENDVNLCPECGKSMSTLAGLRAHVRYVHGDGKTMTVLCPDCGLLVKARCYPRHRERMHGGGGLHRCPVCSRGFLAKELLRQHMDTHARGRPYRCDRCPSAFKQLRNLRMHKRNRHSAAAMPKRNPAAEGGPPAERKPRPPVECAVCLQNFPPRRLRAHMATHEPPKPDVSCTQCNKTFTSAGSLSSHVKWVHLGDRNFPCSYCSAKFKRRDAQVVHERRHTNERPYSCGVCNRLFRQRTDCKRHEAKHALPGFRCDRRRRDQPASANFMKEYDEKSASAEFEETTASGEDHQATTYLSYIVKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00801219; iTF_00800433;
- 90% Identity
- -
- 80% Identity
- -