Hano010417.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Himalopsyche anomala
Gene Symbol
-
Assembly
GCA_031772345.1
Location
CM062831.1:13563622-13565803[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.014 0.67 10.8 1.0 1 19 119 137 119 141 0.92
2 11 3.3e-06 0.00016 22.2 1.1 1 23 147 170 147 170 0.94
3 11 0.0028 0.13 13.0 1.3 1 23 180 202 180 202 0.98
4 11 0.00081 0.038 14.7 0.7 1 23 208 230 208 230 0.98
5 11 0.052 2.5 9.0 0.4 1 23 236 258 236 258 0.97
6 11 0.00021 0.0098 16.6 0.2 1 20 264 283 264 284 0.95
7 11 0.0032 0.15 12.8 2.1 1 23 293 313 293 313 0.98
8 11 1.2e-05 0.00058 20.4 0.3 3 23 321 341 320 341 0.99
9 11 0.00021 0.01 16.5 1.5 1 23 347 369 347 369 0.99
10 11 0.00037 0.018 15.8 2.1 1 23 375 398 375 398 0.95
11 11 0.35 16 6.4 0.0 6 20 409 423 407 424 0.94

Sequence Information

Coding Sequence
ATGACTAACATAAGAGACAAGCTAAGACCTCAGAGGGAAGCCAAGGTCAAATTTGAAACTGGGCATCGAAATAATTTCAAAGCCAAAGACAAAATTTGCCGGAAAAAGACTGTCAATCCCTcgacaaaatgtaaaatttctttaaatggcAAAACTAGTAAAAAATCGCCACCCGTCAAACTGAAGAAGTCTAAAATTTCTGATAGTCTCAACAATAAAGGAGGTAAAAAAGACATGGGTCGTAAATCTAAAAATGTCACAGAACCTCTGGCACAAGAAACTCTCAAACAAGAGAACGGGCCAGACCTTCAGacagaagaaaatattaaaagctcGCCGCTCAAGCCGAGGCCTCACAAATGCGAGACGTGCGGGAAAGCTTTTTTGGGAAAGAACGACCTAAGAAAACATGATCTCATTCACTCAGGCCTTAAGCCCTTCGCCTGTCCTCACTGCAGTAAGGCTTTCCGGCAGGCCGGAAACCTTAAAAACCACGTAACCTCTTACCACTCGAACGTGATCGACAACCCATCTGTGTATGTATGCGATCACTGCAGTAAAGCTTTCCTCATCAAGGAGAGGCTCCGCCTGCACATGAGGATCCACACAGGCCACAAGCCGTACTCTTGCCGCCTCTGCCCGATGCGATTTGCACGCCTCGGTCAAGTGCGCCAGCACTCACGCACCCACACTGGCGAGCGAAACTATGCTTGTGAAAGCTGCCCAGCTACCTTCACTTGTGCAGCCAAACTCAAGCTGCACATTAAAGGACACTTTGACGTCCGAGACCACACATGCTATCTCTGCGGCAAGAGTTTCATCCGGCCGGATGCCATCAAAAAGCATCTGGCCTGCTTTCATAACGGTGAGAAACCTTTCCGCTGCCCTGTGTGTCAGAAGTCACTCAAAGGTCACCTACAAGAGCACTTGCGTACGCACGAAGCAGCTCGCCCTCACGGCTGCGCCGAGTGTGGCAGTCGCTTTGCGCAACGGTCGCAACTCACCGTCCATCAGCGCACTCACTCTGGGGCTAGACCTTATCGCTGCCGGGTCTGCTGGCTCGCTTTCGCGCACTCCACAGCCCTCAAACTGCACACGCGTCGACATACAGGTGAGAAACCTTTCTCCTGCCACATGTGTTCGTCCGCCTTTGCGCAATTACCACACCTCAAGAAACATATGCAAGGTGTGCACGGAGAGGGACGCGTCTATCGTCACAACGCCTGTGGGGCTTCATTCCGCGTCAAAATGGAGCTAGAGCGTCATGTAGCTGACTGTGAAAGGGGTAAATCCATTAACGGCGGCGACGAAACGGATTTGTCACCGGAAGAACGACTGTCGCGACGGGTAGCCGCCGCCCACCGACCGGTTGACCCACCAATGGCCCTCACTAAGATGCGGCTGCTGTTGGCCGTTCTGCTCAAAAAGATATCCAGTAACAAAAGACTCGAGGAACTAGGATTCAACAAACGACTCATTGATGACATCCTAATCGAGTCGTTAGAATCTTCCGGGAACGTTCCTTGCAGAGATGACTCGCAGAGTCCTGCGGAAAGACTCAAAAGAAATGTACAACTCCTGTTAGACTGGACAGTCCCGCCGCACTTCATGGACAAGTTTCGCAATGAGCAGCGCTCCACAGAAGAACTCCTCGAAGAGCTCACTAGTTAA
Protein Sequence
MTNIRDKLRPQREAKVKFETGHRNNFKAKDKICRKKTVNPSTKCKISLNGKTSKKSPPVKLKKSKISDSLNNKGGKKDMGRKSKNVTEPLAQETLKQENGPDLQTEENIKSSPLKPRPHKCETCGKAFLGKNDLRKHDLIHSGLKPFACPHCSKAFRQAGNLKNHVTSYHSNVIDNPSVYVCDHCSKAFLIKERLRLHMRIHTGHKPYSCRLCPMRFARLGQVRQHSRTHTGERNYACESCPATFTCAAKLKLHIKGHFDVRDHTCYLCGKSFIRPDAIKKHLACFHNGEKPFRCPVCQKSLKGHLQEHLRTHEAARPHGCAECGSRFAQRSQLTVHQRTHSGARPYRCRVCWLAFAHSTALKLHTRRHTGEKPFSCHMCSSAFAQLPHLKKHMQGVHGEGRVYRHNACGASFRVKMELERHVADCERGKSINGGDETDLSPEERLSRRVAAAHRPVDPPMALTKMRLLLAVLLKKISSNKRLEELGFNKRLIDDILIESLESSGNVPCRDDSQSPAERLKRNVQLLLDWTVPPHFMDKFRNEQRSTEELLEELTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00800392; iTF_00801184;
90% Identity
iTF_00801184;
80% Identity
-