Hano013176.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- -
- Assembly
- GCA_031772345.1
- Location
- CM062835.1:16085337-16089340[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.3e-05 0.0011 19.5 3.3 1 23 105 128 105 128 0.97 2 11 5.3e-05 0.0025 18.4 1.5 2 23 135 157 134 157 0.95 3 11 5.1 2.4e+02 2.7 0.3 2 9 163 170 162 170 0.87 4 11 0.00042 0.02 15.6 0.9 1 23 171 194 171 194 0.96 5 11 0.0014 0.065 14.0 0.1 1 23 217 240 217 240 0.95 6 11 0.0014 0.064 14.0 0.1 1 23 246 268 246 268 0.95 7 11 0.00061 0.029 15.1 0.4 2 23 275 296 274 296 0.96 8 11 0.033 1.6 9.6 0.6 1 23 302 324 302 325 0.92 9 11 2.4e-05 0.0011 19.5 1.1 3 23 332 352 330 352 0.96 10 11 6.8e-05 0.0032 18.1 2.1 1 23 358 381 358 381 0.98 11 11 0.011 0.51 11.2 5.7 1 23 387 410 387 410 0.93
Sequence Information
- Coding Sequence
- ATGATATGCAATGTGTGCTTGCCTCAATTAAATCTAGCATgtgagtttaaatataaatgtcacTTATCTGAAGAAAGACTTCagcaatatattgaaaaaactgcATTATTCACCGTAACAAAAGGCGAAACTGAAAATGGGGGACAACCGTTAGTAGATTTTACGACAGATAATACAGAGACCGTAACTTCTAAAGGCAGTCATACCGACCAAATTCTACAAAAATCGCATCACACTAAAGGCTCAAcgaaacaattaatattaaaatcgaaTAAAAGAAATTCTAGTGTGAAAActgtgaaaaacatgttttacagATGTGTAAAATGCAAGAAAAAGTTTACCAACCAAAAAGCCTTTTTACGACACCTGAAAATTTCGCATGAAATCAAGAAACCCCTAAAATGTGACAAATGCGAAAAATGTTATTCTACACCTGAAAGCCTCAAAGATCACTTTATGGTAATACATGAAGGAAGGAGGTGGActtgtaatatttGCGATAAAAGACACTCTTGCGAGATATGTAAAGAAacatttgtaaagaaattagAGCTGATgatacacttaaaaaatatccattggACGCCTGATGCTAATATGGATTctgaaaaagtgaaaaataatctaatagttaaaaaaaatctgtataattGTACAGAGTGCCCTGCAGTGTTTACTACCGGAGCTGTGTTGAAACGACATACATCAGTGGTACACAACAATGTGAGAACATTCCTATGCAGTGAATGCGGTCACGCAAGTCCATCAGCTGCTGCGCTAAGATCTCATATTCTGCGACATACTGGTGATAAGAATCTGCCATGCCCACACTGCGATATGAGATTTACATGGCGTGCAGCGTTGAAGAGTCACATATCATCTCACACCGGATTAAAACCTTACTTATGTGCTGAATGTGGCCAAGGATTTAATTCAGCAGGAACAAGGCGAGAACATTCCCTCCGCCACCACACCGAGGCGCCACTTGCTTGCCACCATTGTCCTCTGCGCTTTACACGCGCTCCCCAATTGGCAAAACACGCTCGGGTACACGCCGgtGAACAACTCTACCCATGTGAACAGTGTACAGCCAAATATTCGCATAAATCCAGTCTGACTATTCATTACAAAACTATTCATAAAGCTGTAATGCCatacaaatgtaaattttgttcAGAAGCTTTCAGTAATTGTAAGAAACTGTATAAACATAGAGTAAACCAGCATCCAACTGAAAAACGAGCTAAGGTTTTAAGTAAGAATCTACAGAAATAA
- Protein Sequence
- MICNVCLPQLNLACEFKYKCHLSEERLQQYIEKTALFTVTKGETENGGQPLVDFTTDNTETVTSKGSHTDQILQKSHHTKGSTKQLILKSNKRNSSVKTVKNMFYRCVKCKKKFTNQKAFLRHLKISHEIKKPLKCDKCEKCYSTPESLKDHFMVIHEGRRWTCNICDKRHSCEICKETFVKKLELMIHLKNIHWTPDANMDSEKVKNNLIVKKNLYNCTECPAVFTTGAVLKRHTSVVHNNVRTFLCSECGHASPSAAALRSHILRHTGDKNLPCPHCDMRFTWRAALKSHISSHTGLKPYLCAECGQGFNSAGTRREHSLRHHTEAPLACHHCPLRFTRAPQLAKHARVHAGEQLYPCEQCTAKYSHKSSLTIHYKTIHKAVMPYKCKFCSEAFSNCKKLYKHRVNQHPTEKRAKVLSKNLQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -