Hano002547.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Himalopsyche anomala
Gene Symbol
-
Assembly
GCA_031772345.1
Location
CM062822.1:37662123-37671122[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.016 0.77 10.6 0.6 6 21 12 27 7 28 0.88
2 12 0.032 1.5 9.7 0.0 2 20 34 52 33 53 0.94
3 12 0.79 38 5.3 0.2 1 12 225 236 225 245 0.90
4 12 2.3e-05 0.0011 19.5 3.8 1 23 444 466 444 466 0.99
5 12 8.6e-06 0.00041 20.9 0.7 1 23 500 522 500 522 0.99
6 12 1.5e-05 0.00073 20.1 2.7 1 23 575 597 575 597 0.98
7 12 0.0003 0.014 16.1 2.0 1 23 613 635 613 635 0.98
8 12 2.6e-06 0.00012 22.5 4.7 1 23 641 663 641 663 0.98
9 12 0.00081 0.038 14.7 6.8 1 23 669 691 669 691 0.98
10 12 2.9e-06 0.00014 22.4 0.4 1 23 697 719 697 719 0.98
11 12 8.9e-05 0.0042 17.7 0.2 1 23 723 745 723 745 0.98
12 12 0.0013 0.063 14.0 0.1 1 23 753 776 753 776 0.95

Sequence Information

Coding Sequence
ATGGGATCTTTGATGTTAGATTGTCCTCTTTGCTGTGGTAAAACTTTTCCGtcacaaaaaactttaaaatatcacCTGTTGAGTTTGACAGACAACCTTTATTGCCCAGAATGCTCTCTGAGATTCGACAGTTTGAGTTTACTCGTCGAACATTTGGGAGATATATGTGAACAATTTAACCCGATTCAAAGTTCAATCCAAGAACAGAATACACCTGATAAAGTCGGATCCCAGGATAATAAGGTGAATACAACTGAAAAAACTATAAAAGATTGTTCTATAGAAGCGAATATGAACTTGGATATTCCCGAAGAAGAAAAAGGCCACTGCAATCTGGCTGCTTCAGATTTAGatgatagTAAAGTTGTTATCTCTGAATTCCAAGAGAATACATCTGACAATATCAATCTGTTGAATGCAAAAGACATGGAGGGCCGATTAGTAAGTGTCCAAGTGTTGAAATCTGAAGATTACGCCGACGGAAGTGTGCAAGATTTGGAGGTAAGGCTCCTGGAGAGCTCTACTGATGGATCGATTCTTATTCTATCAAATACACAGAACCAAGGGAGCGACAATGATGAACAACTCATTCAATCTCAAGATGAATTATTATCTATTAATTCAGCTGACGctgAAGTACACACGGAAGATGCACAGTCTTCAGATGAAATGTACAGTTGCAACAGTTGCGGAGTTAGTTTCACATCTGTTATAGATCACATCCAGAATTATCACAACGATCAGGAAGTGGTTGTCGAGATGACTGATGAAGACGGTGTTGTCGATGAATCGGCTGATGATGTTGCAATTATCCACGTCACAAATGGCGAGGAAGAAGCTGAAATCAGTGATCAGCAAACGGTGACTGCGAGTGTGCCAGGTGAAACGAGGCGGATAATAATGCAAAGCGGTGACATCGTTACCACTCAGGCCAATATTGCCGAATCAAACGACGGATGTTCAAATGAACGCTGGCGGGCCCCTCAAATCCTGAACACTTTGCGTGAAGAGGAATGTTTAGATCGTGACGGTCGATGGTATACACGAAAAGTGGTTCAGATCGAACGGTTTTGGGATCCATCCGTTGTCAAGTCTGAAAGCTTGTCTGAAGGATCAACATTTAGTGTCAAAGgaaAGCAATCCGAGAACATGGAGACTGACGATGCCAACGGAGAGGTAGTTTCGGTTGAAGCATTTTTACAAGCCGGCGGTGAAATTGATGTCGATGACCCAAACACTTCACGCATATACCACTGCACGGGATGTTACACCCAATTCTTGACGATGCCTGAATTTGAATCGCACGATTGCATATCTACACTTGgaaAATACAAATGTGATCATTGTCCAGTCACTTATAATAATTCTAAATCCCTCTGTGCTCACATGAAAGTACACAAGGCTCTAAAAACCAATGATAAGCGAGCAAGTATCAAAAGAGAAAATAATGAAACTCCCGGTGAAGATGATACTAATCAAAACCGTTTGGTGGGCCCGTTTAAATGTGCGGTCTGCGACACGGTGTTCCCATCAAACAAATCTCTCCGTTTGCATCGGCGCATGCACGACCCGGTGCGATCGCGGCCGATGGAAGGGCCCGTCGAGTACCCTCCGGCCAATGAGAATTCCCTCGCCGAACGCTTTCACTGTTTGCAATGTGACAAATGGATTCACATCGGATACAGGAGGATCCACGAGACAGTTCACACCGGTCAGACTGAATATAACTGTGACATTTGCAATAGGAAGTTTCACACTAAAGAAAATCTTTCGATGCATATGAATGTTCACAATATTGAAAAGGTTTCTAATGTAAAATCAGAAAAAACACTGCCATATGaatgtaattattgtaatagACAATTCGCTCGACCACACGAAAAAGTAAAACATGAAAGAATTCATACAGGTGAAAAACCACACAGCTGTGAAATCTGCGGGAAGACTTTCAGAGTATCATACTGTCTCACTTTGCATATGAGAACTCACACCGGTGCCCGGCCATATATTTGCAATCACTGTGGTAAAAGaTTCAAAGCGCACAGTGTGTACAATCATCATATGTTGACACATTCGGATGTCCGCGCTTACAAATGTCCGTACTGTCCCAAGGCTTTCAAGACATCAGTGCAGTTGGCGGGTCACAAAAACTCTCATACAAAGCCATTTTCTTGCACAGAATGTAACAGACCGTTTGCGTCATTGTATGCAGTCAGAGTTCATATGGATACTCACAAACGgcaaaataatttgaagttcATATGTCAATTGTGCGGCGCCAGCTATGCAAGAGCCTTCGCCCTAAGAGATCATCTTAAAGCTCAACATTACATTGTCGAggATTCCGAAGAACCCGAAGCGAATGTGGCCGCCTTATCAATAATACCCAAGGAAGAGGATAATGTAGAGatggAAAAATTAGTGATGACCAATAGTGACGGTGAAATTGAACTGAACATAGAATACAGTAATTCCTTGCCAACTGCTGAGGAGAATTGA
Protein Sequence
MGSLMLDCPLCCGKTFPSQKTLKYHLLSLTDNLYCPECSLRFDSLSLLVEHLGDICEQFNPIQSSIQEQNTPDKVGSQDNKVNTTEKTIKDCSIEANMNLDIPEEEKGHCNLAASDLDDSKVVISEFQENTSDNINLLNAKDMEGRLVSVQVLKSEDYADGSVQDLEVRLLESSTDGSILILSNTQNQGSDNDEQLIQSQDELLSINSADAEVHTEDAQSSDEMYSCNSCGVSFTSVIDHIQNYHNDQEVVVEMTDEDGVVDESADDVAIIHVTNGEEEAEISDQQTVTASVPGETRRIIMQSGDIVTTQANIAESNDGCSNERWRAPQILNTLREEECLDRDGRWYTRKVVQIERFWDPSVVKSESLSEGSTFSVKGKQSENMETDDANGEVVSVEAFLQAGGEIDVDDPNTSRIYHCTGCYTQFLTMPEFESHDCISTLGKYKCDHCPVTYNNSKSLCAHMKVHKALKTNDKRASIKRENNETPGEDDTNQNRLVGPFKCAVCDTVFPSNKSLRLHRRMHDPVRSRPMEGPVEYPPANENSLAERFHCLQCDKWIHIGYRRIHETVHTGQTEYNCDICNRKFHTKENLSMHMNVHNIEKVSNVKSEKTLPYECNYCNRQFARPHEKVKHERIHTGEKPHSCEICGKTFRVSYCLTLHMRTHTGARPYICNHCGKRFKAHSVYNHHMLTHSDVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCTECNRPFASLYAVRVHMDTHKRQNNLKFICQLCGASYARAFALRDHLKAQHYIVEDSEEPEANVAALSIIPKEEDNVEMEKLVMTNSDGEIELNIEYSNSLPTAEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00801154; iTF_00800369;
90% Identity
iTF_00800369;
80% Identity
-