Hano008151.1
Basic Information
- Insect
- Himalopsyche anomala
- Gene Symbol
- -
- Assembly
- GCA_031772345.1
- Location
- CM062828.1:13271285-13285192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.4 1.6e+02 3.3 0.0 8 21 16 29 10 30 0.89 2 17 0.11 5.2 8.0 0.9 2 23 58 80 57 80 0.94 3 17 0.0014 0.068 13.9 0.4 1 23 86 109 86 109 0.97 4 17 0.0096 0.46 11.3 0.1 3 23 117 137 116 137 0.95 5 17 0.00094 0.045 14.5 2.1 1 20 141 160 141 163 0.93 6 17 0.013 0.59 11.0 0.3 2 23 170 192 170 192 0.96 7 17 0.00068 0.032 14.9 6.3 1 23 197 219 197 219 0.97 8 17 0.00081 0.039 14.7 9.6 2 23 228 249 227 249 0.97 9 17 3.9e-06 0.00019 22.0 2.9 1 23 255 277 255 277 0.95 10 17 7.4e-07 3.5e-05 24.3 0.6 1 23 283 305 283 305 0.98 11 17 4e-06 0.00019 22.0 5.1 1 23 311 333 311 333 0.97 12 17 0.00069 0.033 14.9 2.6 1 23 380 402 380 402 0.96 13 17 0.001 0.048 14.4 0.1 1 23 406 428 406 428 0.98 14 17 1e-06 4.8e-05 23.8 1.2 1 23 437 460 437 460 0.97 15 17 8.1e-06 0.00038 21.0 2.5 1 23 466 488 466 488 0.99 16 17 7.8e-06 0.00037 21.0 0.4 1 23 494 516 494 516 0.99 17 17 7.1e-06 0.00034 21.2 1.8 1 23 522 544 522 544 0.98
Sequence Information
- Coding Sequence
- ATGTTATCAAAGATTGGATCAGAAACCCAGTGCCAAATatctgaaaaacatttttcggaTCCTGTAAGTCTCAAAGAACATCTCATATCTTCGATTGTTATCGATGTAATGGATACCTCTACCAAAGAACAAGAAGCTCACATAAATTTGCATGATGGCCTTGGAGACTCAACTTGCGTATATTGTTTGGAAAAACTGAAAGATAACTCAGAACTGGTGGCCCACGTAAAACACAAACACAACCCTGCAAAACCGTTCCCTTGCAAACTTTGTAATTCATCTTTCATTAGTGACGAAAGTTTACAAgtTCACACGAGAATCAAGCATACCAAAGAACGCACTCTACTCTGCCCAATTTGCCCTAAACGCTACATAGAAGTTCGAGACTTAAATCGTCATAAAATTGCTCACCAGAAAATGTTTTCCTgtcatatttgtttaaaaacattttccctCAAATCAACTCTCAAAATTCACGTTCCAAAACATTTTCGAGTTGGCAATAGGACTTGTCGACAGTGTGGGCAAATTTTGAGGGATGATATTCAGCTAGAACGCCATATCAAAATGATGCATAGCGGTGAATCACACGAGTGTCCGCATTGTTCTAAAGTTTTCTCTCATATAACTCGTCTGACAAAGCATCAGCTATCTCACACTAGTGAAGATAAACGACGTCTTAAATGCCGCCATTGCCCAAAAAGATTTAATTACCGCCATCATCTGAGGAACCATGAGAGAACTCACACCGGAGCCAAGCCTTTCCTCTGCAGCAAATGCGGTAGAGGGTTTTCTCAGTCCCACAATCTGACTGTACATCAAAGACAACACGAAGAAGTCCAACCATATCCTTGTAAACTTTGCGACAAAACTTTTGCACAGCCTCAAAGATTGAGAAGACATATTATGACTCATACAGGTGAAAAACCATTTATGTGTAATCTGTGCGGCAAATGCTTCTGTGACAACGCTACGCTAAAAAGGCATATCAAATTACATGAAGATATTCCTGAAGACCAAGAAGAGTTTGCTGGCTTGAAAATTGAAATGGACTCTACTGATACGACAAAGCCGCTGCCAGAAGCGAAACGTAAAATTAATAGCActaaaaataagacaaaattCAATGGATCTCGCCACATATGCACaatatgcAGCGAAACATTTTCAGACCGAACGAGATTAACTGTTCATAAACGCAATCACTCTTGCAAATATGTCTGTGAAATTTGCAATCGAAAGTTTGCTTTGCCAAGTATACTGGAAGCCCACCGAAAATCTCACCCTGCCGGACAGAGTTTGAGGCAATACGCTTGCTCTGAATGTGGATTGACGTTTCGTCGACAGGAGCACCTTCGAGCTCATGCGAGGCGATCTCATTCGTACGACCGTCCGTACAGTTGTCCTCACTGTCCTGCTAAATATTGCCAGTCTGGAGAATTGACCGTGCATATGCGAAAACATACAGGTGAAAAGCCATATGTGTGCACTTTCTGCAATAAAGCATTTGCAGCTTCTACTTCTCTTACAATCCATATACGAACACATACAGGAGAAAAACCATATCCCTGCAAAATATGCTCTCGGAGCTTTTCCACTTCAACTGGGCTCTTTAGTCACACAAAAACGCATTCTTCTCGATTCAAAGGAGATACCGGTGTCAAAAATGATATTACATTTGACCTATATCAAggtgacattgaaaaaaaactatccaCTCAGTTAATCAACAAACCAGACTCCGACACATTGAAAATTATGCCTGAAAATATTAGGTCTTCGAGTGAAGACGCTTTCAGAGAAAATAAACCTGAAGGTAGACGGTTGcagaagaaaatttatttactaaatgaaaataatgaagttaCTGTAATGGAAATAGTAGACAATTATAGTGAAGTTTCTAATCAATACATCGATTCGGAAAATGAAAACGACGATCGAGATATTTATTTGAGCGATGCCAATAATGACTTAAAAGATCACGGAAATCACATGCCGGATATTGACAACGCTGATTACTTAAATGCGCCAAGTATTTCAAACGACTTAGGAATGCTAGACCCTAATTTcaacttaagaccaaagaataACACAGTGACCGGGTTCAACATATTGCGATCCATCGATGGAAAAATCACATTACACTTGCCGGGAAACGTAAGTTTGAACGATGGAGAcagtttaaaaattgatatggctaataatattgatatagtTAGAGAAACTCATGCGATACAGAATGATGAACCGTTAGAGCTCGCTGAAGACTCGGTCGTTGAGAATACCGATGATGTCGTCTGTGATGAAAATGTCGGAGAAGAAGTCGACGCCATATCAGAGGCCGATTTTGAATTAGTTAAGTATGCAAATGAAGGGAATCAATTACATTCAAAAGAATTGCATATTGCAAATCTATCAATTAAAGGAAAGCAAAATAGGGTCGAACAAAAAGGGATACGTATCAAAGCAGaGACCAAGAAACTTCCGAGTCAGCCTCTTCCACAACTAATCAAGCTTACAGCAGTTGCTCCACGCAAAAAATAG
- Protein Sequence
- MLSKIGSETQCQISEKHFSDPVSLKEHLISSIVIDVMDTSTKEQEAHINLHDGLGDSTCVYCLEKLKDNSELVAHVKHKHNPAKPFPCKLCNSSFISDESLQVHTRIKHTKERTLLCPICPKRYIEVRDLNRHKIAHQKMFSCHICLKTFSLKSTLKIHVPKHFRVGNRTCRQCGQILRDDIQLERHIKMMHSGESHECPHCSKVFSHITRLTKHQLSHTSEDKRRLKCRHCPKRFNYRHHLRNHERTHTGAKPFLCSKCGRGFSQSHNLTVHQRQHEEVQPYPCKLCDKTFAQPQRLRRHIMTHTGEKPFMCNLCGKCFCDNATLKRHIKLHEDIPEDQEEFAGLKIEMDSTDTTKPLPEAKRKINSTKNKTKFNGSRHICTICSETFSDRTRLTVHKRNHSCKYVCEICNRKFALPSILEAHRKSHPAGQSLRQYACSECGLTFRRQEHLRAHARRSHSYDRPYSCPHCPAKYCQSGELTVHMRKHTGEKPYVCTFCNKAFAASTSLTIHIRTHTGEKPYPCKICSRSFSTSTGLFSHTKTHSSRFKGDTGVKNDITFDLYQGDIEKKLSTQLINKPDSDTLKIMPENIRSSSEDAFRENKPEGRRLQKKIYLLNENNEVTVMEIVDNYSEVSNQYIDSENENDDRDIYLSDANNDLKDHGNHMPDIDNADYLNAPSISNDLGMLDPNFNLRPKNNTVTGFNILRSIDGKITLHLPGNVSLNDGDSLKIDMANNIDIVRETHAIQNDEPLELAEDSVVENTDDVVCDENVGEEVDAISEADFELVKYANEGNQLHSKELHIANLSIKGKQNRVEQKGIRIKAETKKLPSQPLPQLIKLTAVAPRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -