Hano016716.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Himalopsyche anomala
Gene Symbol
-
Assembly
GCA_031772345.1
Location
CM062840.1:13115475-13118048[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3e-05 0.0014 19.2 0.3 1 23 181 203 181 203 0.98
2 16 0.0044 0.21 12.4 0.2 3 22 211 230 210 232 0.88
3 16 0.00061 0.029 15.1 1.0 2 23 247 268 246 268 0.95
4 16 0.0011 0.051 14.3 0.8 1 20 274 293 274 295 0.96
5 16 5.1e-05 0.0024 18.5 0.4 1 23 301 324 301 324 0.96
6 16 0.00032 0.015 16.0 0.0 1 23 469 491 469 491 0.98
7 16 1.9e-05 0.00091 19.8 0.8 1 23 498 520 498 520 0.98
8 16 4e-06 0.00019 22.0 3.5 1 20 526 545 526 548 0.96
9 16 0.0018 0.085 13.6 0.6 1 23 554 577 554 577 0.90
10 16 2.7e-06 0.00013 22.5 0.7 3 23 589 609 587 609 0.97
11 16 2.2e-05 0.001 19.6 3.5 1 23 615 637 615 637 0.96
12 16 3e-06 0.00014 22.4 0.5 1 23 643 665 643 665 0.96
13 16 3.4e-06 0.00016 22.2 0.7 1 23 671 693 671 693 0.98
14 16 1.5e-06 7e-05 23.3 1.4 3 23 701 721 699 721 0.96
15 16 3.1e-06 0.00015 22.3 0.7 1 23 727 749 727 749 0.99
16 16 0.00012 0.0055 17.4 0.6 1 23 754 777 754 777 0.97

Sequence Information

Coding Sequence
ATGAGTGACGAAGTGATACGTTTGGATCGCGTCTGCCGCGGTTGCCTCAAAGAAGAAGGCGATATGCGGTCTCTATTTAGAATTGAAGAAGCCGTCGAGCAAAACTCTCCGCGGTTAAACCAAATGTTGACATCTAGCACTCAAATAAGGATAATGGAGAACGACGGCCTTCCCTGTCAAATCTGTGTACATTGCGCTAATAAACTTTTTTCGGCTTACTCGTTTAAACATATGTGCGAAAGTTCTGACGCCAAACTGAGGAAATACGTGTCCCAGAGAAGCCCTACAACAATTATACAGAACTGTCATCAAAATCATAATGCTACGGGTGTAAAACAAGAAGCTAATCTCTCATCGACGACAGGCACTGACATAATAGATTTCAATACGATGTTTAACACGGAATTGTCTTCGATAAAAACTGAAGTGCACGATCAAGGTGATATAAATGCCTCCCAGGCCGAGCGCGAGAACAAAAATATGCCCGAAAACCCAAACGAAAAATGTACTCAGACAAAATTGAGAGATATAGTCGAAATATATAACTGTCCTCAGTGTCAAAAAGTTTTCGGAAACCTCTCAGGTCTAACGGAACATCTGTCGAAACACTCTAAGAAGAAATTTGCTCCCTGCAGTGCGTGCGGTAAAATTTTCTCTAGCATAGGACACCTCAAAGTGCACACAGTGGAAGACCACAGCGTGCGGGTTCCAGAAAAAAATTCATCAGCTCCGCTTTTGAACTGCCAAATGTGCAAATCCTCATTTGACGACTTagatcaattgaaaaaacatatgTCGCTTCACggcaaaaagaaaatttataactGTGAAACTTGCGAGCGAGGCTTTAATCATTCTGACAATTACAAAACACATATTGGGCagtgtaaaggaaaaaaatactcttgtGAAATTTGCGATTTGTCATTCTCCAAGCAAGAAATGTTAAAAACGCACAATGAAACTGTTCACACAGATAAGGTCGGACCTGATGAAAacgtaagtaaaaataaaactcctaTATTAATTCCGCCCAAAACGGAAGTCGAATCAAAGAACGAATCCTCACCATCTATTTTCAAAGAGATCTCTATCGACCTGCCAGTAATCGTCAAAGAAGAACCTCTAGATGAACTATTGGAGGAAGCGGAGAGAGAACACCGCGACCTCAATGACGAGGACGGCCACGATTTTTCAGACAACTACGACAATCACGCGGAACTCTTGAATTTCGATGAAAATGACGGAGGAGTAAAGTCTGAAAATTCCGATTACAAACCGCCCGAGTTCAAAACTAAGCGGAGAGTCGGTAGGCCTAGAAAAGattcattttcacaaaaaaagaaACACAAATTAAAGCATCTCAAATTAGAGATCGGCGAAAACGATTCCCTCTCCGTCAGATACCCCTGCGACGTCTGCCCCAAGATGCTCACTTCTAGTCTCgctttaaaaatacacatggCCAAGCATACGGGAGAAGATCTCCTTTTCACTTGCATGGTGTGCGGTAAATCTTTCAACAGAGCGATACGCCTCAAAAGGCACGAGTTGACTCACGGCCTAGCCAAAAGGTACAAATGCAACTCTTGCGATAAGACATTTAACAGGCAAGATCATCTAAACAAACACATGTGGCAGCACACCGAGAACAAGCCCCACCAGTGTGACGCGTGCCCCCGCGGTTTTATGAGACCTGAACATTTGGAACGCCACAAGGCGGCTCTGCATTCGGGTAAGGAGAAAAATCCCAAAACTACTTTCTGCCCCATATGCAACAGAGGCTTCACAACAGAAAAGTACTTGGAGACACACATGCGCATGCACACCGGAGATAAAACATTCACTTGCAAAGTTTGCGATAAGTCTTTCAATTCAAAGTGGCATCTCAAAGAGCACAACAAGTGGCACTCGGCCGAAAAACCTTTCCTGTGCTCGGAATGCGGGCAAAGATTCATCAGAAACGATTATTTAGTAATTCACATGAGAAGACATAAAGGAGAGAAACCCTACAAATGCAAGTTCTGCGGAAAAGGTTTTCCAAGGGCGACAGATTTGACAGTTCATGAGAGATATCACACCGGAGAAAAAACGCATCTGTGCACAATATGCGGCAAAGGATTTCAAAGACAATACAATCTCACGGTGCATCTGCGGgtgcacactggagaaaagccttacGTGTGCTCTTACTGCGGCAAGCGGTTCGCTCAAGGAAACGACTTAAAGTCCCATGTCCGCAGACACACGGGAGAAAGATACAATTGCGAAGTTTGCGGAGAAGGTTTCATACAGGGCTATCATCTGACTCAGCACAAGCGAAGTGTGCACGGCATCGACTGCACGTCTCACATCCGCAGAGTGGAGAAACACCCCCAAGCCAATCCACAAAACCAGCCTAACCATGTGCCGCCCAAACATAGAAGTCGTACCGCAGCGCATCAGCAGGATCTGGCCGCTCAATTGGCCGCAACAATCTCCGCTCAGATTCAGCAATCCGCCGATGCGTTTCCTTCGACCCAATTTCCCATAATAGGAAATGTGAATCCACAACTCCCGCCTCAGaaactttaa
Protein Sequence
MSDEVIRLDRVCRGCLKEEGDMRSLFRIEEAVEQNSPRLNQMLTSSTQIRIMENDGLPCQICVHCANKLFSAYSFKHMCESSDAKLRKYVSQRSPTTIIQNCHQNHNATGVKQEANLSSTTGTDIIDFNTMFNTELSSIKTEVHDQGDINASQAERENKNMPENPNEKCTQTKLRDIVEIYNCPQCQKVFGNLSGLTEHLSKHSKKKFAPCSACGKIFSSIGHLKVHTVEDHSVRVPEKNSSAPLLNCQMCKSSFDDLDQLKKHMSLHGKKKIYNCETCERGFNHSDNYKTHIGQCKGKKYSCEICDLSFSKQEMLKTHNETVHTDKVGPDENVSKNKTPILIPPKTEVESKNESSPSIFKEISIDLPVIVKEEPLDELLEEAEREHRDLNDEDGHDFSDNYDNHAELLNFDENDGGVKSENSDYKPPEFKTKRRVGRPRKDSFSQKKKHKLKHLKLEIGENDSLSVRYPCDVCPKMLTSSLALKIHMAKHTGEDLLFTCMVCGKSFNRAIRLKRHELTHGLAKRYKCNSCDKTFNRQDHLNKHMWQHTENKPHQCDACPRGFMRPEHLERHKAALHSGKEKNPKTTFCPICNRGFTTEKYLETHMRMHTGDKTFTCKVCDKSFNSKWHLKEHNKWHSAEKPFLCSECGQRFIRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRQYNLTVHLRVHTGEKPYVCSYCGKRFAQGNDLKSHVRRHTGERYNCEVCGEGFIQGYHLTQHKRSVHGIDCTSHIRRVEKHPQANPQNQPNHVPPKHRSRTAAHQQDLAAQLAATISAQIQQSADAFPSTQFPIIGNVNPQLPPQKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00800336; iTF_00801121;
90% Identity
iTF_00800336; iTF_00801121;
80% Identity
-