Hano003048.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Himalopsyche anomala
Gene Symbol
-
Assembly
GCA_031772345.1
Location
CM062823.1:12441090-12446188[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.2e-06 5.7e-05 23.6 0.6 2 23 201 222 200 222 0.97
2 16 1.3e-05 0.00062 20.3 2.4 1 23 228 250 228 250 0.98
3 16 2.9e-07 1.4e-05 25.5 0.3 1 23 256 278 256 278 0.98
4 16 2.2e-05 0.001 19.6 1.0 1 23 284 306 284 306 0.98
5 16 2.3e-06 0.00011 22.7 2.2 1 23 312 334 312 334 0.98
6 16 0.0002 0.0095 16.6 0.7 2 23 341 362 340 362 0.96
7 16 0.00027 0.013 16.2 3.3 1 23 368 390 368 390 0.98
8 16 0.00076 0.036 14.8 0.1 1 23 396 418 396 418 0.95
9 16 8.2e-06 0.00039 21.0 2.6 1 23 424 446 424 446 0.99
10 16 3.4e-05 0.0016 19.0 1.9 1 23 452 474 452 474 0.95
11 16 1.5e-05 0.00073 20.1 1.9 1 23 645 667 645 667 0.98
12 16 0.0066 0.31 11.8 0.1 2 23 674 695 673 695 0.97
13 16 6.1e-05 0.0029 18.2 4.0 1 23 701 723 701 723 0.98
14 16 0.00094 0.045 14.5 0.4 3 23 731 751 729 751 0.97
15 16 1.6e-06 7.8e-05 23.2 3.4 1 23 757 779 757 779 0.99
16 16 4.6e-06 0.00022 21.8 2.1 1 23 785 807 785 807 0.95

Sequence Information

Coding Sequence
atGGCGTTTGCGTTCGCTGATGTTCCTTcagatttcaataatcacaCCAGTCATGAAGAAAAATCGACGGCAGTCGAAATTTTCACTGAAGAaatcaaaaaagaaattgaGCACGATAATCGTGAAAGTATAAACGTGAAAGAGTTACTTAGAGACATCATGCTAGAGGACGGTTATTCCTCAGACGACAATGAAGTCTTAAGCGTCGCcgcgtcaaaaaaaaataacactttcaaACTCGATATAAAGAAAGAGGTTGAATCTTTTCCTGATGATGTCGAATTCGAGTTGAAGTTATGCGATGATCTAAGCGGGAGCGATGATCCGTCATACAGTAATGTCACTAAAAAAAAGGGTGCCAAAAAAAGAGGACGTCCGAGAAAAAACTTAGACGGTAAAGTTTCGCACGAACATAATAAACCTTTAAAACGAGGACGGAACAAAAATGTTCTTGATATCTCAGCTGAAATAGCCAATAACAGTATTGGTATACCGGaagttgaaataaatgtaatggtCAAGAAAAAGTCTTTGAAAAAACATCGGAAGAaaaaaagagacaaaatattcgAGAGAGTCAACATTGAGCCAGGCGTTTGGCCATGTGATTATTgtgataagaaatacacacaGAAAAATGCGTTAAAGTTGCATATAAGAACGCATACTGGCGAAGGACTGTTTCCGTGTCATTTTTGTGACAAGAAATTTTCAGTGCAAAGCAAGCTGGCCTCGCATTTGAAAGTTCACACTGGAGAACGTCCGTACCCGTGCGAATACTGTGATAAACGTTTCGCGGATCGCAGCACTCTTGTCAAACATGTCAGAATACACACAGGAGAGTTTCCTTACTCGTGTCAGTATTGCGAGAAGCGTTTCATCCAAAAATCAGGGTACATAGCGCACACTAAGATTCATACGGGAGAAGATCTGTTCACCTGCGAATTCTGCGGAAAGAAATTCAATAGAAAGTCGACTTTGGTGTCGCACGTCAAGATGCACACAGGTGACAAATTATTAAAGTGCGGGGCTTGCACTAAAGTCTTTACAGTCCAGAGCAAGCTGCTGTCTCATCTGAAGACACATACGGGAGAGAAACCTTTTCAGTGCGATATATGCGATAGAAGGTACACTGAACGTCATACTCTTTTGACTCATTATCGCTTGCACATAGAAGGGAAACCTTTCGCATGCGACGCCTGTCCCAAACAATTTAGCAGAAAGGTATCGCTTGATCGACATGCTTTGATTCATTCAGGGGAACGTCCGTTTCAGTGCGGAGTGTGCGAGAAACGGTTCACGCAGAAAAGTCAAGTCTTGGCTCATCACAGGACTCACACTGGAGAAAGACCCTTTCTATGTGACTTCTGCGgaaaatgttttcaaagaaaAGACGCTCTCGTAGCTCATCGTAAAATACACACCTTAGGTTCACTCATTAATGGCACTGAAGGCAAGCCTGGTGCAGCTCTACCGATTATATGTGGCCTCGATGGGAAACCTCTTATGGCAAAACTGCATGTAAAAGCTGATGATTCTGTTGGGGATACTGATGCAAATCCTGCTAAAAATCTATCTGTCGATGAAACAAAAGCAGACTTGCCGCATAAATCAGAAAGTGATATCATCGGAACAATAGATAGAACTGCATTCAGCGTGGAAATCGATTCGGATGCTCGAGATTGTGAAGACTATATACCGCCCGGAAACCGTTCACCTTCACCTACATCATCCTCAAAGGATTCCTCTTCAAGCTCTGCTTCGTCTTCCGATTCCGATTCATCATCGGAATCATCATCAAGCGATGAAGAAAATAATGATGATGCATCATCAGATAGAGAAATGCCACCGATCGAATCGGACAACTCACAAGTGAAGTTAGAAACTGCCACTGATGACAACATAAAGTCGATAAAAAATGATGTGGTTAGTTTTTCTTGTGATGTCTGCGGAAAATGTTATGCGAAAAAGAGTGGGCTATCCATGCATCAGAGGCTGCATACCGGTGAACGTTTAATATCATGCGATCAATGCCCCAGAGCGTTTGCAGCTCCCAGCAAGTATTTGTCGCACGCCAAAACTCACACGGGTGAAAAGCCTCACGAGTGTGATATTTGCAATAAACGATTCACGGAAAGACATTCTCTCGCCACACATTACAGAATCCACGTGGGTGATAAACCGTATGGATGTGAAGTGTGCACTAAAAGatttacaaaaaagatATCTCTAGATCGCCATGTTCTGATACATTCTGGTGAGCGTCCGTTCCAGTGCAACTCTTGTGATAAACGATTCACGCAGAAGAGCCAAATGGTCACACACCAGCGCACGCACACAGGCGAGAGACCATTCCTCTGCAACTTCTGCGGGAAGAGTTTTAACCGAAAAGACGCTCTGCAAACCCACAGCAAGACCCACACTCTGAAGCATTTGCTGGCCAACGAGTGCTTTAAGAGAGGTGGGGGGGCCACCGTGCGGGATAGACCTCGGCCACTGACTGATATTACGTAG
Protein Sequence
MAFAFADVPSDFNNHTSHEEKSTAVEIFTEEIKKEIEHDNRESINVKELLRDIMLEDGYSSDDNEVLSVAASKKNNTFKLDIKKEVESFPDDVEFELKLCDDLSGSDDPSYSNVTKKKGAKKRGRPRKNLDGKVSHEHNKPLKRGRNKNVLDISAEIANNSIGIPEVEINVMVKKKSLKKHRKKKRDKIFERVNIEPGVWPCDYCDKKYTQKNALKLHIRTHTGEGLFPCHFCDKKFSVQSKLASHLKVHTGERPYPCEYCDKRFADRSTLVKHVRIHTGEFPYSCQYCEKRFIQKSGYIAHTKIHTGEDLFTCEFCGKKFNRKSTLVSHVKMHTGDKLLKCGACTKVFTVQSKLLSHLKTHTGEKPFQCDICDRRYTERHTLLTHYRLHIEGKPFACDACPKQFSRKVSLDRHALIHSGERPFQCGVCEKRFTQKSQVLAHHRTHTGERPFLCDFCGKCFQRKDALVAHRKIHTLGSLINGTEGKPGAALPIICGLDGKPLMAKLHVKADDSVGDTDANPAKNLSVDETKADLPHKSESDIIGTIDRTAFSVEIDSDARDCEDYIPPGNRSPSPTSSSKDSSSSSASSSDSDSSSESSSSDEENNDDASSDREMPPIESDNSQVKLETATDDNIKSIKNDVVSFSCDVCGKCYAKKSGLSMHQRLHTGERLISCDQCPRAFAAPSKYLSHAKTHTGEKPHECDICNKRFTERHSLATHYRIHVGDKPYGCEVCTKRFTKKISLDRHVLIHSGERPFQCNSCDKRFTQKSQMVTHQRTHTGERPFLCNFCGKSFNRKDALQTHSKTHTLKHLLANECFKRGGGATVRDRPRPLTDIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-