Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 3.4e-05 0.003 18.0 1.0 3 21 2 20 1 21 0.95

2 7 3.5 3.2e+02 2.2 0.1 4 11 21 28 21 28 0.88

3 7 0.0021 0.19 12.4 3.0 1 21 27 47 27 48 0.95

4 7 0.013 1.2 9.8 0.3 1 19 141 159 141 159 0.94

5 7 0.07 6.3 7.6 1.1 1 15 170 184 170 186 0.88

6 7 0.00036 0.032 14.8 0.7 1 21 198 218 198 219 0.96

7 7 3.5e-06 0.00031 21.1 3.4 1 23 227 250 227 251 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	3.4e-05	0.003	18.0	1.0	3	21	2	20	1	21	0.95
2	7	3.5	3.2e+02	2.2	0.1	4	11	21	28	21	28	0.88
3	7	0.0021	0.19	12.4	3.0	1	21	27	47	27	48	0.95
4	7	0.013	1.2	9.8	0.3	1	19	141	159	141	159	0.94
5	7	0.07	6.3	7.6	1.1	1	15	170	184	170	186	0.88
6	7	0.00036	0.032	14.8	0.7	1	21	198	218	198	219	0.96
7	7	3.5e-06	0.00031	21.1	3.4	1	23	227	250	227	251	0.97

Coding Sequence: ATGTGCTCGCAGTGCGGCACGAGTTACACAAAACGTTCTCACCTTATTTATCACATACGTCACGAGTGCGGAAGGACTTTCAAGTGTCGTCGTTGCGACAAAACGTTCCTCCACGGCAGCAGTTTACGAAGGCATCAGTCGCGATGTGCGAGAGCCTATAGTCGACGTCATCTGCCGATTCTTCCGGTGGACGCGACGATCGGACGTGGTTGCACGCAGCCGCGTTACGTTCAGTCGAAAAACGATGTTCTTCGCGGGGCGAGAAGGCCAACGTCGTCGAGGCTCAGGATTTCAAACGATTCGCTTCAATACGCGAGTCGTTTGCAGCGCAGCGACGCGGCAATGTCCTCCGTGCCGATCAGCAACCTTTACACGGGCATGAGAATTCCACAGCAGGAATCGTCCCCGAGCGCGAAAAAATTTCTGTGTCCTCGCTGCAATCGAGGTTACAAAAGGATTTCCGACATGAAAACGCACTGTCAATTTCAGTGCGGCAAGGAGCCGCGCTATCAGTGCCCTTATTGCACGAAGAAAGCTAAATTCTCGTCGAATATCTACGACGTCAGAGCGAGAATCCCGATTGGAAGAACGTATCCGTGCACGAAATGCACGAGCGTTTTCAAACAGAGAAGAAGTCTGGTGACCCACGTGAGATACGAGTGTGGCCAACCACCGAGATTCAAGTGTCCTTACTGCGACATGGTGTCTAAGAAATCGTCGAACGTTACTAAACACATTCGAAGGAAACATCACGGACAAGTTCCTTACAGTCAGAACATTTACAATCCAAATTTTTTAACGGTTTAG
Protein Sequence: MCSQCGTSYTKRSHLIYHIRHECGRTFKCRRCDKTFLHGSSLRRHQSRCARAYSRRHLPILPVDATIGRGCTQPRYVQSKNDVLRGARRPTSSRLRISNDSLQYASRLQRSDAAMSSVPISNLYTGMRIPQQESSPSAKKFLCPRCNRGYKRISDMKTHCQFQCGKEPRYQCPYCTKKAKFSSNIYDVRARIPIGRTYPCTKCTSVFKQRRSLVTHVRYECGQPPRFKCPYCDMVSKKSSNVTKHIRRKHHGQVPYSQNIYNPNFLTV

Sequence clustering based on sequence similarity using MMseqs2