Hami012338.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390725.1:16808029-16812219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.78 70 4.3 0.1 2 20 187 205 187 206 0.95 2 13 0.006 0.53 10.9 4.5 2 23 362 384 362 384 0.93 3 13 0.00064 0.057 14.0 2.1 3 23 456 477 456 477 0.97 4 13 6.6 5.9e+02 1.4 7.6 3 23 564 585 563 585 0.95 5 13 1.1 98 3.8 1.7 6 23 661 679 655 679 0.91 6 13 0.048 4.3 8.1 0.1 3 23 732 753 730 753 0.94 7 13 0.022 2 9.2 0.1 2 23 777 799 776 799 0.91 8 13 0.15 14 6.5 4.4 2 23 868 890 867 890 0.96 9 13 0.012 1 10.0 2.4 2 23 904 926 903 926 0.94 10 13 0.0003 0.027 15.0 0.1 2 23 987 1009 987 1009 0.93 11 13 0.054 4.8 7.9 1.6 1 23 1106 1128 1106 1128 0.98 12 13 0.00052 0.047 14.3 0.7 2 23 1146 1168 1145 1168 0.96 13 13 0.037 3.3 8.5 0.5 1 23 1273 1296 1273 1296 0.97
Sequence Information
- Coding Sequence
- ATGGCGTCCACAGTGGCCCGTGAACAATCGGCGGGAATGATGATGGAGCAGCGAATGAGCGAGATCGACAGCGAGAGTTCGAGCAGTTGCGAGGGGCGCGAGGCTCGTAAACGTTTGCGCGAGGACAGCACGGACAACAACAGCAGCGGCAGTCCGAAGAAGCGTCGAAAGCAGACGACGCCGGTACGATTTCCAACGTCGTTGATGAATAACAATGGCGATCGAGCTGGGtccgaggaggaggaggaggaggaggaggaggaggaggaggaggacgaggaggaagcGGAGGGCGAGGATGAGGACGAGTACGATTCGGACGGCAATgacgcggcggcggcggcggcggcggcggcggcggcggcggttcAAGAGGAAACTGGGGCAGGGGCGATTCGGCGCGACGAGGAGACTGCTGGTGAATTGCCGCTGCTGGAAGGTAAGCAAAGAACGATATCGCCGCAGGGGTTTATGCAAAATTTCATTGGACAAACGACAACGGCGTCCGGAGCGACGACGGCTTTCGCGAAAGACGACGATAATCTCAACAGCGAGCGTCGCTGTGAATTCTGCGCTCTTACGTTCGACAACGGGGAGACACTTTCGCGACATTTAGAGTGCGATCACGCGATTGTTGGTAACCCGTTACAAGGCGCGCCCGATAATTCGTCGCCGTCCGATCACGTTAGGGTTAAGATCGAACCGCCGAATCTGACGCTCGAATCTGATTCCGAAATCCCCGTTAATCTATCGGGTATAGGTATAAAAAGTTTCACGGCTACGTGGCTAAATGCTCCGGATCaagcgcagcagcagcagcaacagcagcagcagcagcagcagcagcaacatcAACAACTGCAGCAACAACAGATTCAGTCGCAGTCGCAAAATTCACAGGATTGGATAACCCAGAGTCCCCTGACTTCCGTAACGAATCATCTCCAAGCACTGACCTTTCCCGGTGCGCTGACGCAGCAGTACCTTCCCATGCCGCCGGGTTTCTCTCTGAGCGACGCCGGGCAGCTCACCAGCCGCACTCCCGTCGGTCCGGCACCCATGAGGATCTTCAATCCCGACGCGTACTGTGATCTTTGCAACAAGGAATTTTGCAACAAGTACTTTCTGAAAACTCACAGAGCCAACAAGCATGGAATTTACGCCGATACACCCTGCCAGAGTGCCATCGATAATCCGGATGTCCCGGGCATGCCGGGTGGCGTCTTGGCCGGATCATTCGCCGAATCATTCGCCGGATCATTCGCCGGATCATTCGCCAGCAATAGCCTCAAGTCGGAGCAGTCCCGTGCCGGGCTGCAAGTTTCCATGCCGATAATTGCCGTGCCGTTGGGCAACGCGGTAGGCTGCGACGTGTGCCAGAAGCGATTCAAGAACGACGACACCCTGAGAAAACACAAGCAAAAGGTCCACAACGACTCGATGGACAATCAAGAGTCGCACTCAATGTCGGCGACGGTCAGCAGCGCCGAGGACGATCGTGAAGTGTCGCGAAGCAGCCCCAGCGCCATGGAAGCGCTCTTCAAGCAGGAATTCGGCGTTGAGCAAGAGGACTCGAAATTCATGCCAGCGCCGCGACACCTGTCGCCGCAGTCGAGCCAACAGGCCAGAGAATCGGGCTTCAACGTCGATCGGCTCAGAAGATTAGGCGTCATAAATCCCGAGGCATTCTGCGAGATCTGCTGCAAGGAGTACTGCAACAAATACTTTCTTCGTACGCACAAGATGAAAAGACACGGCATCTATGTGCAGCAGGAGAACGAGAAGCAACAACCGAGCAATCCCGGGAGCGCCGGGAGCGCCGGGAGCGCCGGGAGCGCCGGGAGCGCCGCGAGCTGGCATCAGATACAAACGAGTCCGTTGAATCTCATGGTAACGGGCGACAGCAACGCCGGGGGGAGCTCGTCGGAATCGGGCGACCGCGGCCCCGGCGAGGATTCCGGCGAGTGTAAGCCCTGCTGCTGCGGTATACGATTTCAAACGTCGGGGCTGTATCGCGCGCACCGCGCCAAGGTACACGAGGTCGTCGAGGACGCCGGCAAGTCACCCAAGCGGCATTTCGAGCTAGATTCCAGCACGATCGATCAACGCACCGATTCCATCTCGGAGGATCTTCGGAAACTTCAGACGATGATTCTCCAGCTGAACGGCTTGGAGTCGAGCAAGGCGATTGCCTGCGGCGTTTGCGGCAAAGAGTGCGACGGCATCGGTGCCCTGAGGACTCACATGAGTCTGGAGCACAGTGGAATCGCCGAAGAATTGTCCGCGTTTTCGCAACCAGACGACAATTCGCCGAACGGCCCTTGGACCGTGTGCGGCGCGTGTGACAAAGAGTGCGAAAACCCGGAAGCACTGAGACAACATATCACGGAGGAACATCGGAGCAGCCCGAACATCGTCCCGACGGCGATGGCAGCAACGGCTTGCCCGCAAACGGCGGTGATTTCGCCGTCGGTGGCGGCTTCATCGGCCGCGAGTGCGCTAACGATACCGGCGTCGATAACCCCGACGGCTCTCGCGGCGCAGGCGCCCGTGACATCCCAAGCCGAGAGAAAAGTCACCTCAATGACACCGACCTCGAGTTACTGCGAGCTGTGTCGCAAGGAATTGTGCAACAAGTACTTTATGAAGACTCACATGCAGAAGATGCACAATATCGAGATTGAGAATGGTTCGCAGATCGGCGGTGTCGTATGCAACATATGCAACAAGGAATTGTGCAGCAAATATTTTCTCCGTGTTCACAAGCAAAATACTCACGGTATAGTCGACGAGGGTAGCGGCGCGACATCCGCCAGCAAGCAGGAGGCTTACgaggcggtggcggcggcggcgtcgGCGGCGTCGGCGGCGGCGTCGTCGTTGAGCAACGACGATACCGCACTGAAGCCCGATCAGCTCGGTGACTTGAGCCATCGGTATTTCACCCACTTTACGGAGGTATGCCCGGTATGCAACAGACGATTCCGAAGTATAAAATGGCTAAAGGCTCACCTGTTGGGTGATCATGGAAAAACGGGAGTCGACAAGTGGCGCGAGCTCGAGAGCCAGTATCAAGGTACATCGAGAGGTGGAACGAGAGTCGTCGGTACGAGCGGCAGAACGGCGGCGCAGCAGCATCAGAGCCAAATAAAGATACCAAACGGTTCGGAGATGgcgcaacagcagcaacagcagcagcagcagcagcagcagcagcagcaggtgAAGAAGAGCGATTACGCGGGCAACCTGCTGGGCAATCAGGTTTTGTCGAGTCTGTTTGGTTCTACGATGGAGGAACAACGTTCCAAGAGTTATCGTTGCTCCTATTGCAACTTTACAACGACCGTGCTGCCATTCCTGTTTCTCCATGAGAGGTCGCACGCGAGTCCGCGGGATAGCAGCGCGACCCTCGACGGCAGCGGGGGGTCCCTCTCGTGCCCGTTGTGCTCGCAGACGTTCGCCCAGCCCGAGCTCATGCATCGTCACTTGCTGACGCGTCATCGATTCTCGGGACTGCTCGGGCAGTTGTCCGGCTCGCTGGTGAACGGCCCGCGGAACGAGGTCGGTAATGCCGAGAGAGCCAACGACGCTGTCAACGAGATGGCTGACTCGGAGGATCGCTCGGAAGATCGCCCGGTGGATCAGTCAGCGGACTCGCGGCAGGCGAGCCCGCTGCTGCCGGCGCTGCTGCCGGCGCTGCTGCCGGCGCTGCTGCCGGCGCTGCTGCCGGCGCCGCCGCTGGCAAATGCCGAATCGGCCAAGGGTCAAAAGAGTCGCGACGAGCCAGCGGTGCAGGTCACACCCCAGGGAGCTTACAAGTGCGCCCAGTGCGGTTACGCCACGGCCAATCTCAACAGAATCAAGAAACACGTGAAAAAAGATCACAGAGCGTTGGGTGACGCGACCGAGAGCGTCATTGACGAACTGACGAAAACACTGAAGGACGTCGCGAACAAGCACAAATTGCCAGCGAGTTACGCAATGCCCCAGGACATGAATTCGAATCCCGACGCGACGACGATTATGCAACCATTTTTGATAGAGGAGCGGGGAGAAGCTGGGAGAATCGCTGGCGCTGGCGTTGACACCAACGGCGAGGGACACTTTGCACCTGCGCTCGTTTATTTGCCGGTAAAAGCGAGGATCAGCGGTTCACTCGCGGCATCCTTCACCCTCAGTCCCGCTTGA
- Protein Sequence
- MASTVAREQSAGMMMEQRMSEIDSESSSSCEGREARKRLREDSTDNNSSGSPKKRRKQTTPVRFPTSLMNNNGDRAGSEEEEEEEEEEEEEDEEEAEGEDEDEYDSDGNDAAAAAAAAAAAAVQEETGAGAIRRDEETAGELPLLEGKQRTISPQGFMQNFIGQTTTASGATTAFAKDDDNLNSERRCEFCALTFDNGETLSRHLECDHAIVGNPLQGAPDNSSPSDHVRVKIEPPNLTLESDSEIPVNLSGIGIKSFTATWLNAPDQAQQQQQQQQQQQQQQHQQLQQQQIQSQSQNSQDWITQSPLTSVTNHLQALTFPGALTQQYLPMPPGFSLSDAGQLTSRTPVGPAPMRIFNPDAYCDLCNKEFCNKYFLKTHRANKHGIYADTPCQSAIDNPDVPGMPGGVLAGSFAESFAGSFAGSFASNSLKSEQSRAGLQVSMPIIAVPLGNAVGCDVCQKRFKNDDTLRKHKQKVHNDSMDNQESHSMSATVSSAEDDREVSRSSPSAMEALFKQEFGVEQEDSKFMPAPRHLSPQSSQQARESGFNVDRLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIYVQQENEKQQPSNPGSAGSAGSAGSAGSAASWHQIQTSPLNLMVTGDSNAGGSSSESGDRGPGEDSGECKPCCCGIRFQTSGLYRAHRAKVHEVVEDAGKSPKRHFELDSSTIDQRTDSISEDLRKLQTMILQLNGLESSKAIACGVCGKECDGIGALRTHMSLEHSGIAEELSAFSQPDDNSPNGPWTVCGACDKECENPEALRQHITEEHRSSPNIVPTAMAATACPQTAVISPSVAASSAASALTIPASITPTALAAQAPVTSQAERKVTSMTPTSSYCELCRKELCNKYFMKTHMQKMHNIEIENGSQIGGVVCNICNKELCSKYFLRVHKQNTHGIVDEGSGATSASKQEAYEAVAAAASAASAAASSLSNDDTALKPDQLGDLSHRYFTHFTEVCPVCNRRFRSIKWLKAHLLGDHGKTGVDKWRELESQYQGTSRGGTRVVGTSGRTAAQQHQSQIKIPNGSEMAQQQQQQQQQQQQQQQVKKSDYAGNLLGNQVLSSLFGSTMEEQRSKSYRCSYCNFTTTVLPFLFLHERSHASPRDSSATLDGSGGSLSCPLCSQTFAQPELMHRHLLTRHRFSGLLGQLSGSLVNGPRNEVGNAERANDAVNEMADSEDRSEDRPVDQSADSRQASPLLPALLPALLPALLPALLPAPPLANAESAKGQKSRDEPAVQVTPQGAYKCAQCGYATANLNRIKKHVKKDHRALGDATESVIDELTKTLKDVANKHKLPASYAMPQDMNSNPDATTIMQPFLIEERGEAGRIAGAGVDTNGEGHFAPALVYLPVKARISGSLAASFTLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -