Hami016801.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390729.1:6769257-6771653[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.31 27 5.6 5.5 1 23 277 299 277 299 0.92 2 10 0.00048 0.042 14.4 0.4 1 23 304 326 304 326 0.98 3 10 0.00038 0.034 14.7 3.9 2 23 336 357 336 357 0.96 4 10 9.4e-05 0.0084 16.6 0.7 1 23 462 485 462 486 0.96 5 10 5.1e-05 0.0045 17.5 3.5 1 23 516 538 516 538 0.98 6 10 0.00014 0.012 16.1 4.0 1 23 552 574 552 574 0.96 7 10 0.00047 0.042 14.4 5.5 1 23 580 602 580 602 0.98 8 10 0.0012 0.1 13.2 3.2 1 23 608 630 608 630 0.98 9 10 4e-05 0.0035 17.8 6.5 1 23 636 658 636 658 0.98 10 10 0.00092 0.082 13.5 2.7 1 21 664 684 664 689 0.92
Sequence Information
- Coding Sequence
- atggaaatttcaaacaaaagtgcTGTTTCTCCGAAAGAAAGCGACGATGCATGTAGAGTTTGTTTATCGTCCAAGAACGACAACAAgtgtattttttcctttccaatGACTTTCAATCGTCATGATGCTCCAGACTtgtggaaaaaattgcaattttacggTGGCATCGAGGTTAAACACGGCGATGGGCTACCATCGAAAATGTGCGACAAATGTATTGGCGACTTGCGTCACGTTCACGAGTTTCGAACGCGGTGCCAGGAAACTGACAAAAAGTTGAGATCGTCGAGCGAACGCGGCAGTGACGAAAATAATGCAGATTCATCTCGAGACGCCGGACAAGGAGAATTTAAACGCAGCGACGGTCCGGAGATTTCTCAAAACTGCGCAGCATTTTGTGAAAAAGCTATCGATGCCAAAAAAATTGTAGGAAAAAGGACTTTAATCGAGAGAGGCACTGGTCGAACGCGAGGGAGAACGATGTCGAGAGAATCTAGCTTGGAAAATCTCGGCGAAGCTTGGAAAATTCCCACAAAATTATCACCCGTTTTTCTCAACGACGAAAGGACGAAAATGGTGGCTCGAAAGTCAGAGACGAAAGAGAGTTTTGCCGAGAACCCTACGGATGACTTCCGACCCAAAAGGTCCATCGTTTTCAGGAGAATCACTTCGAtggaatgtttgaaaaatcgcaaagAACGTCAGAGGCGATACGTGAAAAAAGCTGCGTACGGAAGAATCAAGAGGAAAGATGTAAAAGTATCCGAGATCGATGAAATCTGCGCAGCGTCGTCTCGAAAATCAGAGTCCGATCTTGGGATCTTGCGGCACGAATGCACCAAATGTCACAGATCCtacaaaagggaaaaactgTCGAAGGCGCACGAATCCAGCCACGTTTCCCACAAATTTTCTTGCGACCAATGCGACGAGCGATTCGCCAGACTCGTGGAGTTCTTGGAGCATTCGAGATCGCACGACTCGCGGAGAAAGTTCGAGGCGGCGAGTTgcaaaatttgtaaaaaaaaatttcgcaaagcATCGACGATGGTCAGGCACTTGCACGTTCACAAAAGAGAGAATCCCAGGGCTGTTTgtgcgattttgaaaaacatgagggatgagagaaaagtggaaaaatcgCCCAACGTCGATGGGCTGTGGAGCGCGTCGAACAAGCCTGATGAAAGTCACTCGCCGTTTGAGGAgagagacgcgaaaaaaatgacgagagtCGATTCGAAAACCGaggaatttttcgatgtttcttcgacgagcgaaatttcgacgGGACCGGAAATTCCGAGCGACGACGGGTCAGCGATAAAGCTGATAAACATGTGGATTCGAGAGGAATTGGATTCGGAAAACGACGGCAAAGTCTTCCCCTGCGGTGTTTGCAAAAAGTCCTACGTAAGCGAGAAATCATTGCTCAAACACATAGCAAAGATTCACCACGAGTCATGCGGTGTTTGTGAAGAAAGTTGCACCTGTGCGgataaagttgaaaaaatcgtcaggAAGAACACCGAAGAAACGACGTTACATCGTTGCAGAGAGTGCGAAAAGACGTTCGAGAAAGAAACGAAGCTCGAAAAACACATGAAGATTCACACGCGCGACAAAGCATCGGATGACAAAGATTTCAAGCGATTCTTGTGTCACATTTGCAGCAAAACTTTTCGCCAAAATACCGGCTTGATGTTTCACATGAGAACCCATACGGGCTACAAGCCGCACGTTTGTAGATACTGCGGGCGCGGTTTTACCTCGAATTCAAATTGCACGAATCACGAGCGCACCCACACCGGTGACAGACCGTTCGTTTGTCACTTTTGCAGCGCGGCTTTCGCTAAATCCTGCACGTTGAAGGCTCACATAACAACGCACACCGGCGAGGCGAATTATCATTGTAAAACCTGCGGCAAATCGTTCAGAAGGTTGAAATACTTGAAAGAGCACAGATTTACGCACACGGGCGAGAAACCGTTCGTGTGCAAAATGTGCGGTACAGCCTATAGTCATTCCGGTAGTTTGTTcgttcatgaaaaaaaatgcaaagctCATCGAGACTCGACGAATAATTATGGAGATGCTGGGACGATTCTAATCGATAACTCTGATTTTGAGATCGATCCTCCCATATTGTTGACTCAGAGTTTCGACGTTGGTGCCACTAATCCCGAAGAGAACGACATTTTCATTGCGGACTTGCAGCGAATCGATCGGGTCAACGATAATATCCACTCGAGCCAGACGAGCGCTGTTTCTAACGTACAAAATTTCAACGGCAATTGCCGAGTCTTTCCAGCGTAG
- Protein Sequence
- MEISNKSAVSPKESDDACRVCLSSKNDNKCIFSFPMTFNRHDAPDLWKKLQFYGGIEVKHGDGLPSKMCDKCIGDLRHVHEFRTRCQETDKKLRSSSERGSDENNADSSRDAGQGEFKRSDGPEISQNCAAFCEKAIDAKKIVGKRTLIERGTGRTRGRTMSRESSLENLGEAWKIPTKLSPVFLNDERTKMVARKSETKESFAENPTDDFRPKRSIVFRRITSMECLKNRKERQRRYVKKAAYGRIKRKDVKVSEIDEICAASSRKSESDLGILRHECTKCHRSYKREKLSKAHESSHVSHKFSCDQCDERFARLVEFLEHSRSHDSRRKFEAASCKICKKKFRKASTMVRHLHVHKRENPRAVCAILKNMRDERKVEKSPNVDGLWSASNKPDESHSPFEERDAKKMTRVDSKTEEFFDVSSTSEISTGPEIPSDDGSAIKLINMWIREELDSENDGKVFPCGVCKKSYVSEKSLLKHIAKIHHESCGVCEESCTCADKVEKIVRKNTEETTLHRCRECEKTFEKETKLEKHMKIHTRDKASDDKDFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCRYCGRGFTSNSNCTNHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPFVCKMCGTAYSHSGSLFVHEKKCKAHRDSTNNYGDAGTILIDNSDFEIDPPILLTQSFDVGATNPEENDIFIADLQRIDRVNDNIHSSQTSAVSNVQNFNGNCRVFPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -