Hami010551.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390724.1:11047408-11050050[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.043 3.8 8.3 0.5 2 21 116 134 115 135 0.85 2 13 0.0011 0.097 13.3 1.2 2 20 142 160 141 163 0.95 3 13 0.00083 0.074 13.6 3.1 1 23 169 192 169 192 0.93 4 13 3.5e-05 0.0032 18.0 3.2 1 23 198 220 198 220 0.98 5 13 8.5e-05 0.0076 16.8 0.0 1 23 355 377 355 377 0.97 6 13 0.00027 0.024 15.2 0.8 2 21 387 406 386 407 0.93 7 13 0.00053 0.047 14.3 1.9 1 20 429 448 429 451 0.92 8 13 0.0098 0.88 10.3 0.4 1 23 456 479 456 479 0.93 9 13 1.2e-06 0.00011 22.6 0.3 1 23 485 507 485 507 0.98 10 13 0.0019 0.17 12.5 6.3 1 23 514 536 514 536 0.98 11 13 0.00033 0.03 14.9 0.4 3 23 544 564 542 564 0.97 12 13 0.00038 0.034 14.7 0.2 1 23 570 593 570 593 0.96 13 13 0.052 4.6 8.0 0.0 2 23 858 879 857 879 0.96
Sequence Information
- Coding Sequence
- ATGGAAACTCACGATAACGAGTACGTAACATTTCCGATTCACGAAACGATTCAAGAGAACGTAGTGTCGCACGAGGAAGTGTGCGAACCCTCGGACAATTGTGTAATACCAGAAAATCTGGTCAGCGTTGTAGTAGAAGACGTTGATTCCGTCATAAGCGAGACTCAAGTAGCCGTTGAAATATTGACGGAGCAGTCTGACGATGACGAAGGAAGATCGATTTATCCGATTTACATAAAGCAGGAGGAACAGCACCATTATACATCGGGTGACGATGAATCAATGGCGGTAGAGGCATTGCGTCAATTGGGAGGAATGTATCCGAGTttcgaagaaaagaaaattccctGTCCGAAATGTTCGAATCATTTTGACCAATCGGAGCTGGCGAAACATCACCAGGCATGCACAATCGGTAAATTGTCATGTCCGACGTGTCGCGAGGTTTTCGATAGACGACAAGATTTGAACAATCACATGGTGTGTCATCAAGTAGACAGGCCGCACGCTTGTCGTACCTGCGGCAACTTGTTTCGCTCAAAGTCTCACCTCCAGACACACATGGCGCAAATACACAAAGCGGAAAAGCTACACAAGTGTACCATCTGCGGCTCGGATTTTCATCGCCCGTCGAGTCTCTCGAATCACATGAAGATTCACACGTACATCGCTGGAAGAGCCCTCGTACAATCGACGAATCAAAATTCCCAGACTGAGACATTGCGCAAGTGGCCGGAGGAGAGCCAGAATGAAGGCGCGTCGACAAATTACGACGTACACTGGTCGGTGCCGTACAATTTTGACGCGAGCGTCGAAACGATCGTCAGcgccaatgaaaaaattgatacgcTTCAAGAATTCACCGTTCTGCCCAACGGAGAAGTTGCCCAGTTCGATTATACGAATCAAGATACCCTGGTGGGTTCTGTAAATCAATACAACATCGGTATCAACAGCTTTAGCAATACGGAACCTCTCGTCAAACCTGAAAATCTGTCATTTCCGTCGGGTGACGAGAAAAACTATGCCGACGTTGAGCAGACCGACGGAAATCCCAAGAATTATGCGTGCGGTCAGTGCGGCGCGAATTTTTCGCGCCCTACCGCCCTGGCTTCGCACGTCAAGATTCACAACGCCAAAAGTTGGTCAATGCCCATCGAGTGCGAATACTGCGACAAGCAGTTTCAAGATTCCAATCACTTGTCCACTCATCAGACAACGtgtgcgaaaaaattgatgcaaaGCAGTCTGGAGAACGGGGTGACGAATGGAAAATGGGGGAAGCACGCTTGCGCCGAATGCGGCAAAAAGTTTACCACCAAACAAAAGATGTTTCGGCATCAGTGGATACATCGAAAAAAGACACATACGTGCGAGATATGCGGCTCGCAGTTTGAGAAACAGAATCAGCTCGATGAACATCGTTTGGCGGCGCATCCGGGCGATTCGCCGTTCACCTGCACAGAGTGCGGCAAGAGTTTCGTCTCGAGGCAGGGACTTTGGGAACACGGTAGAACTCACGCCGGAAGTCCGGCGCACTTTCATTGCGACACTTGCTCCAAGACTTTTTCGTCGCGACAGGGTTATCTGATACATCATCGTACGCACACCGGCGAGAGACCTTACGGCTGCAAATTCTGCTGGAAGGCATTTCGCGATGGCGGCACATTGAGAAAGCACGAGCGTATACACACGGGTGAGCGTCCCCATGTTTGTCCGCTATGTTCACGAGCCTTCAATCAAAAAGTCGTCTTGCGCGAGCACGTCCGATGGGTACACGCAGCTGGTAAGAACGAGACCGAAGTTAGCGGTCCCCCTTACCCGTGTCCACTTTGCGCCGCGCTCAATCAAGATCGCGACGAACTCTGCGCTCACATAGTCAAACACTCGGATCAAATGATCGCCGAGGCCAAGGCCAAGACGAATAACAATGCCGCGAAAGCCAAGGTGACAAAgagaaaagcaaaaacgaGCACTCTCGCCAAGTCCGGCAATGTCGAGATCGAAGAATCGATAtcgaagaaagaagagaaCGAAGCTCTGCTCTCCATTGCCGAGAATACGCAAGAGAATGCGGGAATAATCAGGAACGATGAAATAGGAGAACATTTGATGCTTGTTGGAAGGGACAAAGTTGTGGATTACTTAGGCACTGAAGAAGGAaggagaaacgacgaaaatctcGTAGTCTCCGGACAAACGGCGATAATAACGAAGATAAGGCAGAGCGATGTTCTTCATTTGATACACAATGCAAAGAGGCACGAGACTCTTCGTTTTTTAGGAGCGAGCAAGGCTAAGAACACGCTTCATCTCATTACCAAGCAGAATCAATCACTTCCGGTATTGGCTATAAGAAATCCTCAGACTCACGAGAGTTTTTCCAGTCAAATGACAAATACCGGAAACTCGCGGATTTCCGGCGATAACGAAAACTTGGCGGATGGCAGCATGCAAGATGACTGCTTGGTGGACGACGAGGCGAATCACATAAGCGCCGAACAAGTCGCACAGTTGCTACAGGATCAGGGACGAAGGGAGAGCGATAACGACGATGGGGATGAAGAAATGGTTTGTGGTATATGCGGCGATGATTTCAATGACAAAAATGTTCTCATGGAACACGTTAAGATTCACatataa
- Protein Sequence
- METHDNEYVTFPIHETIQENVVSHEEVCEPSDNCVIPENLVSVVVEDVDSVISETQVAVEILTEQSDDDEGRSIYPIYIKQEEQHHYTSGDDESMAVEALRQLGGMYPSFEEKKIPCPKCSNHFDQSELAKHHQACTIGKLSCPTCREVFDRRQDLNNHMVCHQVDRPHACRTCGNLFRSKSHLQTHMAQIHKAEKLHKCTICGSDFHRPSSLSNHMKIHTYIAGRALVQSTNQNSQTETLRKWPEESQNEGASTNYDVHWSVPYNFDASVETIVSANEKIDTLQEFTVLPNGEVAQFDYTNQDTLVGSVNQYNIGINSFSNTEPLVKPENLSFPSGDEKNYADVEQTDGNPKNYACGQCGANFSRPTALASHVKIHNAKSWSMPIECEYCDKQFQDSNHLSTHQTTCAKKLMQSSLENGVTNGKWGKHACAECGKKFTTKQKMFRHQWIHRKKTHTCEICGSQFEKQNQLDEHRLAAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVSGPPYPCPLCAALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAAKAKVTKRKAKTSTLAKSGNVEIEESISKKEENEALLSIAENTQENAGIIRNDEIGEHLMLVGRDKVVDYLGTEEGRRNDENLVVSGQTAIITKIRQSDVLHLIHNAKRHETLRFLGASKAKNTLHLITKQNQSLPVLAIRNPQTHESFSSQMTNTGNSRISGDNENLADGSMQDDCLVDDEANHISAEQVAQLLQDQGRRESDNDDGDEEMVCGICGDDFNDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -