Basic Information

Insect: Heteropelma amictum
Gene Symbol: -
Assembly: GCA_959613375.1
Location: OY390720.1:30370748-30372268[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.6e-05 0.0014 19.0 1.8 1 23 201 223 201 223 0.98

2 10 2.5e-06 0.00022 21.6 0.5 1 23 234 256 234 256 0.97

3 10 1.3e-06 0.00012 22.4 1.2 1 23 262 284 262 284 0.97

4 10 0.0054 0.48 11.1 1.6 1 23 289 312 289 312 0.97

5 10 0.0099 0.88 10.3 5.4 1 20 318 337 318 340 0.95

6 10 0.00082 0.074 13.7 0.6 1 23 346 369 346 369 0.96

7 10 2.5e-05 0.0022 18.5 1.8 2 23 380 401 379 401 0.92

8 10 1e-05 0.0009 19.7 1.0 1 23 405 427 405 427 0.95

9 10 8.5e-06 0.00076 19.9 1.7 1 23 433 455 433 455 0.98

10 10 4e-07 3.6e-05 24.1 1.5 1 23 461 483 461 483 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.6e-05	0.0014	19.0	1.8	1	23	201	223	201	223	0.98
2	10	2.5e-06	0.00022	21.6	0.5	1	23	234	256	234	256	0.97
3	10	1.3e-06	0.00012	22.4	1.2	1	23	262	284	262	284	0.97
4	10	0.0054	0.48	11.1	1.6	1	23	289	312	289	312	0.97
5	10	0.0099	0.88	10.3	5.4	1	20	318	337	318	340	0.95
6	10	0.00082	0.074	13.7	0.6	1	23	346	369	346	369	0.96
7	10	2.5e-05	0.0022	18.5	1.8	2	23	380	401	379	401	0.92
8	10	1e-05	0.0009	19.7	1.0	1	23	405	427	405	427	0.95
9	10	8.5e-06	0.00076	19.9	1.7	1	23	433	455	433	455	0.98
10	10	4e-07	3.6e-05	24.1	1.5	1	23	461	483	461	483	0.99

Sequence Information

Coding Sequence: ATGGATGATTTCTATCGAATTCCGAAATCCAAGTGCTACATGATGATGACGCGTCCGTCaatggacgagaaaacaacGTGGCGGCGAATGTCCTCCAAGGAACAGGCGGATATCGTAGATAGCGGAAAGATCATCGGCAAGGATGAACTTTCGTCGGCTATCGTAGGATCTAGTGAAATCCCCGTGATAAAGATAGAGTGTATCTCGGACGGACAGGTGGTTTCGGAGCCGCCgaaaaggaggagaaaacGGAGAATCAATGAGAAGCGACGGAGAAAGCAGgctcgtccgatcgaagacgGAAAGCGCGTCGTCGAGGAATCCACGTCGGGATTTCGTTCAGAGAAGCTCGATTCCGAATATTTCGACGATATCACGCCGGATAACGAGGATTCTCGCGAACAGAGagaaaacatcgacgacgacgacgacgacgacatcGACGAAGGtgaaacgaatttcgaaaaaacaccGGAAGTCAGTCGCCTCGAGGGTGAATCGCGAGATTCCCATCGAGAGTCTCACGAGCCATCGAGAATCGGAGAAACCGTCGTTGACGAGTCGCGAAGAAAGAGCGACAGAAAACGTTCGTCGATTTCTTACGAGTGTAAGCCTTGCGGTTACAAATTTTCGCGAAAGTGGAAGTACGAGAGGCACATGAATTCACACGCGAGGAAAACGAAGAGCGAGCCTGTGAGTTTCGAGTGCGAGCCGTgtggaaaaaatttcacgcgACCGTCGGCCTACAAGCAGCACATGCTCAAGCACAGCAGCGAGAAGCCGCACAAGTGCGACGTGTGCGACAGAGCCTTCAAAAGACCGTACGAATTGAAGATGCATCGTGAAATACACAGTGGTTCGATGCACACGTGCGATATATGTAGCTTCAGCACGGCTTACAAAGTCTCGCTGATGGTGCACAAGAAGCGAGTGCATCAAAAAGTTTATCGTCACAAGTGCGAACAGTGCGAGAAGGCGTTCATGTCGAAGCACGAGCTGGAGGACCATCGAACCTGTCATCTCGGTACAAAGAGTTTTATCTGTGAAATTTGCGGGAACGCGTTCTTACAGCGGAGCTATCTCGTTCATCACAAGAGAGTCGTTCACGGTGTGCACAACAGAGCGCCGATGGAGCTCAAGTGCGAATTGTGCGACAAAACATTCGCCACGAAGTATTGCCTTCAGAATCACGTGGGGCTTCATTCGCAAAAATTCCTGTGCTCGCAGTGCGGCAAGGAATTCGCTTCGAATTATTCGTTGAGAATGCACAATCGAATGCACACGGGTGAACGTCCGCACAAGTGTAACATGTGTTCAAAATCGTTCGCGCGTTCCAACGCCCTCGCCGTTCACAAGCTCACCCATACGGGTCAGAGGCCTTACGTGTGTGATATTTGCGACAAGACGTTCACGCAACGTACGACGATGATGGCGCACAGGCGTAAACATCCCGGTAGTCATCCACCGCCTCCTCGTACGTCGCTGGTCGAACTCGCCAACGCCGCCGACTCCAATTCCTGA
Protein Sequence: MDDFYRIPKSKCYMMMTRPSMDEKTTWRRMSSKEQADIVDSGKIIGKDELSSAIVGSSEIPVIKIECISDGQVVSEPPKRRRKRRINEKRRRKQARPIEDGKRVVEESTSGFRSEKLDSEYFDDITPDNEDSREQRENIDDDDDDDIDEGETNFEKTPEVSRLEGESRDSHRESHEPSRIGETVVDESRRKSDRKRSSISYECKPCGYKFSRKWKYERHMNSHARKTKSEPVSFECEPCGKNFTRPSAYKQHMLKHSSEKPHKCDVCDRAFKRPYELKMHREIHSGSMHTCDICSFSTAYKVSLMVHKKRVHQKVYRHKCEQCEKAFMSKHELEDHRTCHLGTKSFICEICGNAFLQRSYLVHHKRVVHGVHNRAPMELKCELCDKTFATKYCLQNHVGLHSQKFLCSQCGKEFASNYSLRMHNRMHTGERPHKCNMCSKSFARSNALAVHKLTHTGQRPYVCDICDKTFTQRTTMMAHRRKHPGSHPPPPRTSLVELANAADSNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -