Hami006584.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390722.1:18748925-18752228[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.035 3.1 8.5 0.3 3 21 8 27 6 28 0.85 2 14 5.5 4.9e+02 1.6 0.0 2 20 34 52 33 54 0.90 3 14 0.65 58 4.5 0.3 1 12 189 200 189 209 0.87 4 14 0.015 1.3 9.7 3.5 1 23 397 419 397 419 0.98 5 14 0.00087 0.078 13.6 0.1 2 23 423 444 422 444 0.97 6 14 0.00011 0.0099 16.4 3.0 1 23 456 478 456 478 0.98 7 14 0.018 1.6 9.5 0.3 1 23 497 518 497 518 0.95 8 14 0.00067 0.06 13.9 0.1 2 23 524 545 523 545 0.95 9 14 4.8e-05 0.0043 17.5 4.8 1 23 600 622 600 622 0.99 10 14 2.1e-06 0.00019 21.8 3.7 1 23 628 650 628 650 0.96 11 14 0.00013 0.011 16.2 4.6 1 23 656 678 656 678 0.98 12 14 1.5e-06 0.00013 22.3 0.8 1 23 684 706 684 706 0.98 13 14 9.2e-05 0.0082 16.6 0.2 1 23 710 732 710 732 0.99 14 14 0.0004 0.035 14.7 0.2 1 23 740 762 740 762 0.97
Sequence Information
- Coding Sequence
- ATGGGCTCTATGAGTTTAGTTTGTCCCATGTGCTGCGGGGAGACATTCGACAATTCCCAATCCCTTAAATACCATTTGCTGAGCATGACTGACAATCTCTATTGCCCCAACTGTGCCGAACGCTCAGATTCCGTTGCTGCGCTTATACAGCATCTAGATTCTTGCGGCGAGAATTCTGAACTCGTCGGTGTTTATCCTTTCGGCGATTACAAAAGCATCACTATCGAAACCGAGGCGGATCAGACTCACCATACTTTTTTTGCCGGTGAGAGCGACGAAGCCGAACTAATCACACCAGAAGTTCAAGTGGCCGATACGATAATAGAACATGAGAATCttaaaaaacgagaagaagaCAAACATGGGAAAAGCGTCGAGCTGAGCGACAAGAGcataaaagaagaaaatatgtCGATTGGAACGGTGGAAGCTAAAAAAGAACTGTACGCCTCGTCCGATAATAATGCGGAGCCTCGCAGCTCCCTGGAAACGGATCCTTGCACCGATCGTACGGAGGAAGGAACAGAAGGGACGGAATTTGTCCAAGTAGAATCAGACGCTCTGTACAGTTGCAGCAGCTGCGGCATAAGCTTCAACAGTGTATTATCTCACATAAAGCAGTATCACGACGGTCAGGAAGTAGTGCTGGAAATGGCCGAACAGCAGATGAACGATTTGCCCAAGGAAAATGACGAGCGCGAAAACGACAGAGATaacgacgaggaggaggaaattTATGATTCATCCACGAATTATCCAAGATCCGTGAAGAGAAGTTCGAGCGTGAGTTCAAGCGGTGCACCGGAGCGTTCGTCGTCCGAACTCCCACGAGCACGTCAGACAATGAATACTCTGAGAAGCGAGGAGTGCGTGGACAGCGAAGGAAGACTTTACACGAGAAAAGTCGTGCAGATCGAAAGATTCTGGGATCAGGGATCGGAAACTCCGACCGACGGTCAATCTAAACTCGAACGTGAACAGCAGAGGCAATCGTCGAAAAGCGCTTCGATGATTGAGAAATTCTTCTCAAACGCTCAGGGCTTGAAgattcgagcgaaaaattccAAGGCGATAACGACGGAAGACGCGACAACAACGTCAGCGACCGTGacaacgacaacaacgacgacgacgacagcAGCGACATCTACGAATTCTGCCACCGTACCACACGCTACCGTCAGAATGTACAGATGCAACAAGTGTCTCGAACAATTCACCAAGCTGGCCGATTTTCGTCTTCATACCTGTATACACGGCAATAATCAATGCGATCTCTGCGAGCAAGCGTTCGCAAGCGCGAAAGCTCTGCAGTTGCATTCGCGAATTCACGAAGCGGAGGCTGAAGCTACGACGGACACGACTTTCGTGTGCCAAACTTGCGGTACCGAATTCTCATCGCACAAGAGCCTTAGATTGCATTCCAGAATGCACGCTCCGGTTAGAGCGAGACACGTAGATGCGCCCGAGGGAACGGCCACTGAGAATTTCACGTGCGTCGAATGCGGGAAAACACTGTCCGAATCGTACAGGAAAGCTCATATGGCCTTGCACAAGGGTGATTCCGTGACTTGTACAGTTTGCAACAGGAAATTTGATTCAGCCGATAGTTTGGCGATGCATGCGGCGGTGCACCTAGAATTCGGACAGCTCAAGTCGCAAAAAAACTTACAGTGGACACCGACGGACGACAATTCGAACGTGGACAGCGAGCCGACTGGTGGCGGAGGTAAGCGCGCGAAGAAAGACAAAGAGAGGGATAAGAGTGGCGCGAGTGGTGACGCTTCGGAAAAACCTTATCAATGCCAACATTGCGGAAGAAGATTCACGAGGCCCCACGAGAAGGTCAAACACGAAAGAATACATACCGGAGAAAAGCCTCACGCTTGCGAGGTCTGCGGTAAAACGTTCCGTGTCTCTTACTGTCTGACTCTACACATGAGAACGCATACGGGCGTACGTCCGTACGAGTGTCAGCACTGCGGCAAAAGATTCAAGGCATCCTCGGTGTACAATCATCACTTATTGACGCACGGTGAAGAGAGAGCCTACACGTGTCCCTACTGTCCCAAGACGTTCAAGACCCGCGTACAACTGGCGGGACACAAGAACAGTCACACGAAACCATTTCGATGCACCGAGTGTTCCCGGCCGTTCGCTTCGCTCTACGCCGCTCGCGCTCACATTCAGACTCACAAGAAAGACAACAATCTAAAGTTCAGTTGTTACATCTGTGGCGCATCCTACGGACGCGCGTTCGCCTTGAAGGACCACCTGAAGCAGCACGCCGGACAGGATATTCTCATTCCTCCGCCGGAGCCGGCTCGAGAGGAAGAAGTCGCGGACGCCGACGACTTTATCATCGCGGCGCAAGCGGCGGATTACGAAGAGATGGAAGAAATTGAGGAAATCGACGAGGAAGAGCACAAATTAGTCAAGATCGCGGCTGAAGCTGATAATATTGATGTTGATTGTTCGACGTTTGACGGAAGTCGCGATCGGTTGgaatga
- Protein Sequence
- MGSMSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVAALIQHLDSCGENSELVGVYPFGDYKSITIETEADQTHHTFFAGESDEAELITPEVQVADTIIEHENLKKREEDKHGKSVELSDKSIKEENMSIGTVEAKKELYASSDNNAEPRSSLETDPCTDRTEEGTEGTEFVQVESDALYSCSSCGISFNSVLSHIKQYHDGQEVVLEMAEQQMNDLPKENDERENDRDNDEEEEIYDSSTNYPRSVKRSSSVSSSGAPERSSSELPRARQTMNTLRSEECVDSEGRLYTRKVVQIERFWDQGSETPTDGQSKLEREQQRQSSKSASMIEKFFSNAQGLKIRAKNSKAITTEDATTTSATVTTTTTTTTTAATSTNSATVPHATVRMYRCNKCLEQFTKLADFRLHTCIHGNNQCDLCEQAFASAKALQLHSRIHEAEAEATTDTTFVCQTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTATENFTCVECGKTLSESYRKAHMALHKGDSVTCTVCNRKFDSADSLAMHAAVHLEFGQLKSQKNLQWTPTDDNSNVDSEPTGGGGKRAKKDKERDKSGASGDASEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYECQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHAGQDILIPPPEPAREEEVADADDFIIAAQAADYEEMEEIEEIDEEEHKLVKIAAEADNIDVDCSTFDGSRDRLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -