Hami004927.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390722.1:42266-52194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 7.2e-06 0.00065 20.1 1.0 1 23 229 251 229 251 0.98 2 31 0.0031 0.28 11.8 1.9 1 23 274 297 274 297 0.96 3 31 0.00023 0.021 15.4 0.5 2 23 304 326 303 326 0.96 4 31 0.00022 0.019 15.5 0.4 1 21 346 366 346 367 0.95 5 31 0.28 25 5.7 0.1 2 23 489 511 488 511 0.88 6 31 0.012 1.1 10.0 0.1 1 23 516 539 516 539 0.94 7 31 0.00014 0.012 16.1 0.1 1 23 609 632 609 632 0.96 8 31 0.0093 0.83 10.3 0.4 1 23 638 661 638 661 0.96 9 31 0.17 15 6.4 1.9 1 23 674 696 674 696 0.97 10 31 4.1e-05 0.0037 17.8 0.9 3 23 758 779 757 779 0.96 11 31 0.078 6.9 7.4 0.7 2 23 847 870 846 870 0.92 12 31 6.5 5.8e+02 1.4 0.0 2 23 879 901 879 901 0.83 13 31 0.1 9 7.1 0.0 2 23 908 930 907 930 0.95 14 31 1.5e-05 0.0013 19.1 1.2 1 23 938 960 938 960 0.98 15 31 1.2 1.1e+02 3.7 0.2 3 23 1007 1029 1006 1029 0.84 16 31 0.00024 0.022 15.3 3.3 1 23 1032 1055 1032 1055 0.97 17 31 0.041 3.7 8.3 0.7 2 23 1062 1084 1061 1084 0.95 18 31 0.0063 0.56 10.9 6.3 1 21 1126 1146 1126 1147 0.95 19 31 0.0031 0.28 11.8 1.8 2 23 1161 1182 1160 1183 0.93 20 31 0.29 26 5.6 1.2 1 23 1186 1209 1186 1209 0.92 21 31 0.00063 0.056 14.0 1.4 2 23 1216 1239 1215 1239 0.94 22 31 3.5 3.2e+02 2.2 0.2 2 23 1247 1269 1247 1269 0.94 23 31 4.2 3.8e+02 2.0 0.0 2 23 1276 1298 1275 1298 0.87 24 31 0.13 12 6.7 3.0 2 23 1307 1329 1307 1329 0.96 25 31 3.5 3.1e+02 2.2 1.6 2 23 1335 1357 1335 1357 0.92 26 31 0.052 4.7 8.0 0.2 1 23 1437 1460 1437 1460 0.95 27 31 0.0028 0.25 12.0 0.5 1 22 1492 1513 1492 1513 0.96 28 31 0.33 29 5.5 1.3 2 23 1620 1642 1619 1642 0.94 29 31 0.072 6.5 7.5 0.4 2 23 1649 1671 1648 1671 0.97 30 31 0.8 72 4.3 2.5 1 23 1682 1704 1682 1704 0.97 31 31 0.66 59 4.5 0.0 3 19 1713 1729 1713 1732 0.93
Sequence Information
- Coding Sequence
- ATGGAGCCTTCCAAGGAACGTTACAACGAGCTGTGCAGGCTGTGCGCCTCTTACGACGCCGTCAAGATGGATATTTTCGGCAACGAGGGAAAGAATCGTCAGCTCGTCGATAAGATACAGACCTGCTTACCCTTTAAAATTGCCGAGGACGATCGCCTTCCAAAGTGCTTGTGTTACCGATGCATGtacaatttggaaaatttttacgACTTCAGAACGGCCTGCGTCAACGCCGTCGCGCTCTTGGAGAGATGCTTGCCGCACGCCGGCAACATCGTCGGCAAAGACGCGGTGAAGAGCGAAGCGGCCAACTGTTCGGAATTGCGCTCGGAGCTGCtgaaggagaaggaaaaaatgccGATTCTCATACCGGAAGCGCCTATAGTAAATCCGAACGCAGCGCTCGGGACACCGCCCCGATTGAATTCGGACGGCGAAGCCGATCACGGAATCGAGGAAATTCGCGGTGACGCGAGTTGCGCGGAAGACGGAATCGTCAAACGTTTCGACGACGCGGAAGATCGCAGATCGGACGATTTCGAGATGGACATGAATCCGAGTGATTTTTTAGAGATGACGTCCATGGTGACGGAGGAGTCGGAGGAGAATTGTGGGAAAAAGAGTCTCGTTGTCAACTCGAGGATGAACGAGGCGTTTCAGCATACGTCGGAGCAGCACGAGGTTTACGTTTGTTCGTTGTGCAACAAGGCCTTCAGTTCCAAAGGCCATTTGTCGCTGCACGCGAGGATTCACGCCGGGGCTGGTAACGTTATCGGCGCCAAAGTCATCACCGACGATCACACCTCGTACAAGAGGCCTTATCAGTGCGATTTGTGCAACAAATCCTACTCGACGGCCAAACATCGATGGGGGCATGTCTCGACGACTCACAGAGGTCATCCAGCGGTGACGTGCGCGTACTGCTCGCGAATATACTCGACTCGAACGAATCTCGAGGAGCACATAAAATCACGACACACCGGACTCCCACCACCGCCGGAACTGCCGATAACTTATGTACAGCCGGACAATCGGTACAAGTGCAAAACTTGTCCGAAGATGTACACAAACGTGACGGATCTCAACAAGCACGGGAGAGTGTGCGCGGCGGATCGTACGAAGCAAAAGCCTGATAAAAAGGTGTCGGGGAAGAGCAAGAGTCGGGTGGAAACGTGCGAGACGTCGAGCACGGATACCGACGACGACCTGGACGACGAAGACGACCTGGAcgagaacgacgacgacgacgacctggacgaggaggaggacgacgacgacgatggcAACGATTACAGGCACGCGGAggcaaaattatcgaaaaatccgcACCTGACGATCCTCAAACAGGCCCTGGCGAATCCGAGCAAAACCAAGAGAAACTACGAGGATAGAAACGTACTGAGCAACAAGCCCGTGAAGGTGGCGAGGATGGAGAAGGACGAGGGTGACCCGCGCAAGAGATGGTACTGCGAGATGTGCCCGGAGAACTTTGCCTCTATCGACCGTCTGAAGGAGCACGAGAGCGCGAATCACACCGAGAGGCCGTACGCTTGCGTGCTGTGCTCCAAGGATTTCGTCCTGAAGACGTCGCTGAGCCGTCACATAGTTTCGGCCCACGGTGTCGACCCCGGTCCGATCCTGGAGAGCGACGCCAAGAGAACGAAGAGAGTCGCGACGTTGGCCCAAAGATGGCGCaagaaattgcgaaaaacgGGCATGAGCGGGGACACGATGATGACCTTGACGACGGTGGGTAGAGAGGCGACCGACTCCTCGGAGGAGGCCGAGAGCTCGCGCGGCAACATGATCGAGATCGAAACGGTCTTCGTCTGCGAGATTTGCACTCGCGACTTCAACGACCGTGCCTCCCTCTGGCTTCACATACGCGCGACTCACAAAGAATTCGCCGCCTTCGCCTGTGGCGTCTGCCTCAAGATATGCTCGGACAACGCGCAGCTCCTGAATCACGTCAACATGTATCACGGTGGCTCGAAACTCCTCGTCTCCGAGCAGCGTCGTTACAGCTGTACGATCTGCGGCAGGCAGCACGAttcccgaaaaaaattaatgacccACGTCTCCATACACAATGTCGATCCCGGCTACGACCCGGCGAGTTTCGTTCAGCTCAACGCCAATTATCACAACGAGACTTTCAACGGTACTGACATCCTCGTTGCCGCCTCCACCGGCGCAAACAACACCACCACCACCGCGTCCGATCGTCATCCCATGGACTTTGACGCCGGGGACGACAGCGACAGAGTCGACTGTTACATATGCTACAAGTCATTCCCCAACGAGGATCATCTCATTCGCCATCAACGAAACGCTCACAAGACGGAGCCCGTGATGCCTTGCGCCGATCTGACGACGCAGAGCAACGGTGGGCCTCCGACAGCGGGGGCCAAcgggacgacgacgacgaaagcTCAGTATCATCTGTTTTTCGTTTGCGAGTTGTGCGGCAGTTCGCATCCGAGCAAGTGGGAGCGTTGGCTCCACGTGAGCAGCAATCACGCCGACGATCCGTCCATGAGAtgcgagagagacgacTGTGGGAAGATTTTCGCTACCAGAGGTCTGAAGAACGAGCACGCCCAGCATCATTTGATCCAGGGGGCCTCGCCGAACACGTGCGAGGTTTGCGGCAAATTATGGGGAAGTCGCGTCGATTATTGGAAGCACGTGATGGGCGTGCACTCGGACACGGTGCCGTTGATATGCGGCGTGTGTCTCAAAGTCTTCCCCGACGTAGCCAGGCTCAGTTCTCACGTTAAAACGAATCATTGGCCCTTGACGAACGGCGATTTCAGTTGCGACATCTGCGGCAGGCCTTACTCGAACAAATCCAAGATGTCGAGGCATCGAAAGATTCACGGCTCGGAGATACTCGCCGATCCGTCGACGAAGGACGGTAGAATCGGGGGCGAGACGCGCCCGGAGGAAatgacgacaacgacgacgacgacgacggcgacgacgacgcgaATTTACGACGCCAATCCGGAGCCCTCGTGCGAGATGTGCGCGGATCTCACCTTCGAGAGCTGGCAAACGCTGCGCGATCATCGGCGCGCCGTTCACGCTCTGTTCCCGTGCGATTTGTGCAACAAGTGTTACGGACGAACGTCGCACCTCTGGAAGCACGTTAATCGCGTTCACAAGGGTCACGAGGACGTAACTTGCCGTTATTGCATGAAGACGAGCGCCTCGAGGGAACATCTGATGGCGCACATCGCCAAGATACATCGTTACGAGCCCGAGAGCCTCGAGTTAGCGAGTCAGGCGGCGAGTTACGAGAAACGCCCGAGCGGCGGCGCTGCGAACGTTGGAACggaggaggacgaggagggGGGAGTTACCGGCGGAGCGCATCACTGCGACAAATGCCGCAAGAGCTTCCACAAGCGTTATCTCCTGCGTCGCCATATGAAGGGCTGCCAAAATTATCGAAAGGATCCCGGTGCCCTGCTGACGCGCTGTCGAGCCTGCGAGAGGATATTCAAGGATCGCGCGAGCCTGCAAAAACACATCGAGAATCATCACAGCGAGTACACGTGTCACTTGTGCAACGAGACGGTCACGTCCAAGCTCGGCATCATGACGCACAATCGTCTGAATCACATACGGCATCCCGACCTCACGTGCGAGCACGGCAATTGCGGCAAGCTCTTTCGCACGAAGGAGGATCTCGAGTCGCATCGTCGCGATCACAAGTATCACGGATCACCGAACGTTTGTGACTTTTGCGGCGACACCGTCGACAACAAGCTCAAACTCAAGATGCACGTGTTGTCGCTTCATCGAAACGAGATCGGCGTCTCCTGCGGCGTGTGTCTCATACCGATGAAGGATCCGAAGGATCTCAAGAAACACGTCGAGGACGAGCATCCCGGTGTGCTTTTGCGACCAAACACCTGTCAGGTTTGCGGCAAACGTTACGCCTCCAAGTGGAAAGCCTTCGATCACACGAAAAAGTGCCACGGCAAGGTTTTCCGCACGTGCAAACAGTGTCTGGCGGTTTTCACGAGCGACGCCGACATACGGCATCATTACGAGCACGTGCACAATGTACCGAAGGATCAGCTCGCCGGCTTTGAGAATCGTCATCTCGACAATTCCGATGTCGTCGTCAAGGACGAGCCCGAGGATTACGATTACGAGGACGAGGATCAGCGAATGCGAGAGTCGAGACgcgaggacgacgaggacgaggaggcggaggaggaggaggaggaggaggatgaggAGTACATCGACAACGAGATGAGCGAGAGGAGACGAAGACGGGGTGCCCGCGACACTCACGACTGCGACATCTGTCCCGAGATATTCCTCAATCGCGAGACCCTCGCCGATCATTACAGGAACGTTCACAATACCGATTCCGAGAGGATGTTCAAGAGGATCAAACTAGAGGGCGCCACCGGGGGACGTTCCGTGCGAATGATGATGCGCGAACGCGACAACTTTGAGTGCAAGAATTGCTCGAGGCAATTCAGCACGGAGAGCGTATTTTGGAATCACATAAACACGTGCACGAGGCGCGCCGGCGGTGGGCCTCCGAACGACGCTGCCTTGTCGTCCGCTACGTCGATACTGGAGGCGCGCCTCAAGAGCAACGGCAGGATAAAGAAGGAACCGCCCGATCTCGACCTCGACGCGACCAATCTCAACATACCGGATTTCAATCTGTTCGAGGACATTAACATGCGTCTCTCCGAACAGAAGCCCATACCTAACCTCATGCCGCTGTCACAGCTGCGACTTCCACCGGGGAAGAAACCGACCGTCGGTAAAGACGCGAGGAAAGATTCTCGAAAGGTCTACGACGAGTCGACGAATACCGTGTGCGTCTGCGAGGTTTGCGGCAAACAGTGGCCCGCCAAGAAACACCTCTGGCAGCATTTGATACGCTTTCATCGCGCGGAGGCCGCCGTCACTTGCGGCGTTTGCCTCAAGCTCTGTGACGATTATGAACAATTGGCGCAGCACCTGCGCACCGATCACGAGTCCGTTCTGTCGCGCGAGGGCAATAACTTTACGTGCAAAACTTGCGGTCGTTATCACAACGCCCGGAGCAAGCTGTTGCTTCACATGAGCATACACatcggtggtggtggtggtgTCTGGTGTCGAAAGTGCGAGCGTAGTTTTCAGAGCGAGGAGGGTCTGGAGGAGCACGCCGCCGTGTGCGGCGTGGGTCGCGGGCCTTCGATCGCGATGAGCGATTCCGCGGAAGTCGATCGACGCGACGACGGAGACGTCGGTAACGAGGAAGAACGTGGAAGTCTCATTGGCGACGGTGCTTCGTTGACCGGCGACGCCGAGGAGGAACCAGACTCCTCCGATCATCGGGCGGCCAGCCCGAATTCCGAGGATTCCGAGAACGAGGAGAGCAGTGGCAGCACCAGCGACGGAGCCACCACCGGCAGCGAATCCGAGGACGAGGAGAATCCGGAGGCGGCCAATCGTGGCCTCTCGGAGAGCTCGAACCGGGCGAAACGTTCCGTATCGCGTGAATCGCGAGCCGCCCCCAATGACGGAGTCGTGGTCGTGGTCAAGGAGGAACCGACCGAGGAGTCGAAACCGccgaaggaggaagaaaagtCCTTGGATTCGCCGAGGCGGGACGGCGATGATAATCGCGAATTGTCCGACGACGACGGACCACCCGTGCTCAGTCCGGTTATGCCATTGTCGATCGACGAATCGACCGACGAACCCGACGACGTTGCCAGTCACCGGTTGAGTCCGATGCTTCGGTTGAAAGCCAGTGGGGAAGACGCGCCGGCGGAGAACGAAATTGTTCGTGGGGCTGGTGACGTCGTTGCCGCCGTCGACAAAATTACCGAGACCGTGACTCCCGGTGAACGGAAGGAACCGTCCGCCGATGTTTCCAACAACGAAGCGCCCTCTGACGATGAACACGAGGGCGATAACGTCGACGAGGACAATGACCATTCCGACGAGGACGGCAGAATTCACGTCGTGAATCCCGATGACGAGTATCACTCGGACGACAGTCGAGCTCCGGAGGATGatggaaatgagaaaatatcgGAGCAGGTGGATGAGGAAGAGgtggaagaggaggaggaggaagacgacgaggacgacgaggacgtCGAGGACGTCGAGGACGTCGAGGACGTCGAGGACGAGGATGACGAGAACGAGCACGGGGACATCGACGAACCCCGAGCCGAGGAGGCGAATGGAGAAGTCTCGgatgaaaattcacgattGGAGTACGAAGAGGGAGAGGGACACGATGTGGAGGATGAGGAAATGCCGgaagaaaataacaacgacgacgaggaggagaTGGAGGAagatgaggaggaggaggaggaggaggaagggGAGGAAGGGGAGGAGATGGAACACCAGGATGgtgacgaggaggaggagccccagattgacgaaaattcattgCAGATCCACAATTTGGACGGTACGGTACTGATGGTCGCCAATGACGCCGATGGTAATCAAATATTGATACAGAGGAATGTCTCCGACattgaaaatgacgaatccATCGGCGCGCTCTCGGGATACATTTACGAGGATGACGAGTATGATTTCGCTGGGTTTCAAGTGGAGGATGGTATCCCGGAGGAAGGTAGACGCGATGGTGGGGAAATTGTCCAGGAGGTGGAGGGAGATCACgaagacgaggaggaggaggaggaagaagaagaagaagaggtggacgaggaggaggaggaggaggaggagagagaggacgaggacgaggacgtCGACGACGAAGAGAGGAGGGAGATCGACGGGAGCGAGGAGAGGGAAGATCGCGAGGAGAACGAGTCGCGGATTGACGAAACCGTGGAATTGACCGACAACGAGGTGGAAAAGGAACAAACGAAAGGCCACAACGTCGAGACGGCCGACGAACGGAATTCCAGTGCCAAAAGCAACGTAACGAGGGCATAA
- Protein Sequence
- MEPSKERYNELCRLCASYDAVKMDIFGNEGKNRQLVDKIQTCLPFKIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPHAGNIVGKDAVKSEAANCSELRSELLKEKEKMPILIPEAPIVNPNAALGTPPRLNSDGEADHGIEEIRGDASCAEDGIVKRFDDAEDRRSDDFEMDMNPSDFLEMTSMVTEESEENCGKKSLVVNSRMNEAFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHAGAGNVIGAKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRTNLEEHIKSRHTGLPPPPELPITYVQPDNRYKCKTCPKMYTNVTDLNKHGRVCAADRTKQKPDKKVSGKSKSRVETCETSSTDTDDDLDDEDDLDENDDDDDLDEEEDDDDDGNDYRHAEAKLSKNPHLTILKQALANPSKTKRNYEDRNVLSNKPVKVARMEKDEGDPRKRWYCEMCPENFASIDRLKEHESANHTERPYACVLCSKDFVLKTSLSRHIVSAHGVDPGPILESDAKRTKRVATLAQRWRKKLRKTGMSGDTMMTLTTVGREATDSSEEAESSRGNMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLVSEQRRYSCTICGRQHDSRKKLMTHVSIHNVDPGYDPASFVQLNANYHNETFNGTDILVAASTGANNTTTTASDRHPMDFDAGDDSDRVDCYICYKSFPNEDHLIRHQRNAHKTEPVMPCADLTTQSNGGPPTAGANGTTTTKAQYHLFFVCELCGSSHPSKWERWLHVSSNHADDPSMRCERDDCGKIFATRGLKNEHAQHHLIQGASPNTCEVCGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVARLSSHVKTNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGSEILADPSTKDGRIGGETRPEEMTTTTTTTTATTTRIYDANPEPSCEMCADLTFESWQTLRDHRRAVHALFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCMKTSASREHLMAHIAKIHRYEPESLELASQAASYEKRPSGGAANVGTEEDEEGGVTGGAHHCDKCRKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSEYTCHLCNETVTSKLGIMTHNRLNHIRHPDLTCEHGNCGKLFRTKEDLESHRRDHKYHGSPNVCDFCGDTVDNKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHPGVLLRPNTCQVCGKRYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDADIRHHYEHVHNVPKDQLAGFENRHLDNSDVVVKDEPEDYDYEDEDQRMRESRREDDEDEEAEEEEEEEDEEYIDNEMSERRRRRGARDTHDCDICPEIFLNRETLADHYRNVHNTDSERMFKRIKLEGATGGRSVRMMMRERDNFECKNCSRQFSTESVFWNHINTCTRRAGGGPPNDAALSSATSILEARLKSNGRIKKEPPDLDLDATNLNIPDFNLFEDINMRLSEQKPIPNLMPLSQLRLPPGKKPTVGKDARKDSRKVYDESTNTVCVCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCDDYEQLAQHLRTDHESVLSREGNNFTCKTCGRYHNARSKLLLHMSIHIGGGGGVWCRKCERSFQSEEGLEEHAAVCGVGRGPSIAMSDSAEVDRRDDGDVGNEEERGSLIGDGASLTGDAEEEPDSSDHRAASPNSEDSENEESSGSTSDGATTGSESEDEENPEAANRGLSESSNRAKRSVSRESRAAPNDGVVVVVKEEPTEESKPPKEEEKSLDSPRRDGDDNRELSDDDGPPVLSPVMPLSIDESTDEPDDVASHRLSPMLRLKASGEDAPAENEIVRGAGDVVAAVDKITETVTPGERKEPSADVSNNEAPSDDEHEGDNVDEDNDHSDEDGRIHVVNPDDEYHSDDSRAPEDDGNEKISEQVDEEEVEEEEEEDDEDDEDVEDVEDVEDVEDEDDENEHGDIDEPRAEEANGEVSDENSRLEYEEGEGHDVEDEEMPEENNNDDEEEMEEDEEEEEEEEGEEGEEMEHQDGDEEEEPQIDENSLQIHNLDGTVLMVANDADGNQILIQRNVSDIENDESIGALSGYIYEDDEYDFAGFQVEDGIPEEGRRDGGEIVQEVEGDHEDEEEEEEEEEEEVDEEEEEEEEREDEDEDVDDEERREIDGSEEREDREENESRIDETVELTDNEVEKEQTKGHNVETADERNSSAKSNVTRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -