Hami010056.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390724.1:4501036-4506586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00039 0.035 14.7 0.9 1 23 358 380 358 380 0.95 2 18 0.013 1.2 9.9 0.8 2 23 430 451 429 451 0.97 3 18 0.013 1.1 9.9 2.0 1 23 533 555 533 555 0.94 4 18 0.0025 0.23 12.1 2.2 1 23 559 581 559 581 0.95 5 18 0.0012 0.11 13.2 2.0 3 23 711 732 710 732 0.93 6 18 0.0067 0.6 10.8 1.2 1 20 739 758 739 763 0.92 7 18 9.6e-05 0.0086 16.6 2.9 1 23 860 882 860 882 0.97 8 18 0.00027 0.024 15.2 5.0 1 23 952 974 952 974 0.97 9 18 0.00057 0.051 14.2 1.1 1 20 979 998 979 1000 0.94 10 18 0.00083 0.074 13.6 0.8 2 23 1011 1032 1011 1032 0.98 11 18 1.4e-05 0.0012 19.3 0.7 2 23 1071 1092 1070 1092 0.97 12 18 2.7e-05 0.0024 18.3 1.6 1 23 1097 1119 1097 1119 0.95 13 18 8.9e-05 0.0079 16.7 1.8 1 23 1125 1147 1125 1147 0.98 14 18 4.8e-06 0.00043 20.7 0.4 1 23 1163 1185 1163 1185 0.95 15 18 1.5e-06 0.00014 22.2 0.3 1 23 1191 1213 1191 1213 0.99 16 18 2.9e-05 0.0026 18.2 0.3 1 23 1219 1241 1219 1241 0.98 17 18 0.00016 0.014 15.9 4.1 1 23 1247 1269 1247 1269 0.96 18 18 0.011 1 10.1 0.4 1 20 1275 1294 1275 1296 0.89
Sequence Information
- Coding Sequence
- ATGGACGCTGTAGGTATGGATACGTCGGAGGGTACTCATGATGAAGATGCGATGGAAGAAACCGTTCCTGAGGTTTGCCGGGTCTGTTTGCTCGCACATATGATAATGCGCGATCTGTTTGTCGAGAACAACGTTGTATCACTGTCCATGAAAGCAATGAGCTTTGCCAGTGTTAAGATGATACCAGAAGATGGTTTGCCAGGGCAGGTTTGTTGCGACTGTGCTGACAAACTGGAGGCTGCGTACGAGTTCAAACTACAAGTAGAACAAGCGGACAATGTACTTAGACAGAGATATGATACTCTGAATATCAAAGAAGAACTGTTCTTTAACGAGGTGGAGGTTCATCTAGAAGCGGAACAAGGCGATGATGTACACTCTCTGGATGTCGGGGCTCATTATCAAGCTACCATGGATAGTTTAACTGCCGAGGATATGGATGAAGAAAAACCTACATTGCTCAAGGATCACTTAGCACTGTTGGAGGTGGAGAAGTTGGCGAAGCGGCAAAGCACCGTGGAAGCTGAGCACAAACATGACGACGTGATGAACGAGGAGACTGGCGTATCCGCACTGCTTCAAACAAACGACGAGAATTCTCCATATTCGCACGAGAGTGAAAACAATGTCGTTGAATTGGCTGGTTGCAACGAGAGCTATGGAGAATCGGtgaaaatcagtagtattcaAGATCCCGATGGCATTACATCCGAGGAGCACAATTACATTATGCAGCAGGGTTATACGTTGACGCGTAACGAGGAACAACTTGTAACAGAAGAGGGTGTTAATTTAGTTGACAACGAGTCCGTAAATTATTTATCTCTCATCGATGAGGATATAAGCGTCAAGGATCATTCTAATGAGGAAGAAACAATGGATAACGTTAATTCAGAAGATAAGAAACAATCGGAGGGTgttgaaacggaaaaaagtcCGAGCAAGACACGTCGTAGCAAGCGAAAACTGAGTAAACGTCGACGTACCAGCGAGGAggataattatttcgaaaatttgaatctcaGCAGCAGATTAACAAGATCACAGTACGAGAAAAgtggaaatttttattttctctgttATCTCTGCGACAAACAATTCGTATCGAAGGAAAGATTAAAGGAACATATGGAGTCACACGAGGAAGTGAGACACGCGTTGTCACTGAAGAAGGTGGAAAAATTGCGGAGACGTTCAACGAGTCCGACAAAAGCTATCGTCGAATCGACGGCAATTGTTACGACGGCAACGATCGCTGGTTCTAACGCGTCTGGCAAAAAAGCCAACAAATGTCCGTACTGCGGAAAAGAATACCTCTATGTTATATCGTTCAACAAGCATCTaaagaaacacgaaaaaaacaagagtgTCACGTCGACggattcgtcattttctttgaaaaagtCCGAGCACGTCGAGACCGAAGATTCATCGGATTTCATCGTTCAAGATCAATCGATGCAGATCGAGATGAATAGTCGAATTGAGCTAAACAATGACGATAACGATaacgcgaaaaatgaaaatcagaTGGAAACGAGAAGCCCATCTACGAAGATACGGAGACGAAGATCATTGCGCAATGGGACATCGTCTTACTCTTGCGAGACTTGTGCGAAACATTTTCCAAGCAAACGTGAATTATTTGAACACTCCAGCGAGCATTTTATAATACACAAATGTAATACATGCGATCGTGAATTCGATGGGCTCGAGAAGCTTCGCAGACACAGAACCGGACACGTTGTCGATGGTGTATTGTCACAGCAAGACCTCGAGGATGATGTTTATGCTAGagatttcgagggaaaaatacaaaatgatGATGTCGGTGAGATGTACAAGAGTGACGGACTCGTCGAAATTCATCGTGACACGGAGGTGGTTAGCGTTCAACGAAATCAAGAGGACGAGGAGGGTGAGGGTAACAGCGATCATGTTGATACTGATAATTCGTGGCATTTGGAAGTCCAGGATGAAATCGATGATCGCGATGATATCAAGTATATTCAAACGAAcaaaatttcggatttttgGCCGGAAACGGCCAACAAATGTCCAATAAAGTATTCGAGCAAAAAGCCTCTCATTCGACGTACGGAATGTGACGAAGACGTAGCTGCGCAGTTTTGTAAATATTGTAATTTGAAATTTGCAACGAAGGATAGCCTTCGGGAACATGTTGAACACGAGCACACTTGTAAGACGAAAACGTTTCATTGTACCGATTGTAACAAAATTTTTGGCAACGAATTAACGCTGAGGAATCATTTGTTCGCAACTGATCACAAAACAATTATTCACGGACAACAATACGATCCGAATAAACGAATGAAACGCGTGGCGGCGAGAGCAGCCCAAAAGATCATTGACAAAATCAAGACTGAGAATGCTTTGGAGGATTACGAGGATCAGGAGGAAGAGGataaaaagttggaaaatgtcAACGAACTGGAGGGCCTCGATTCCCACAGTTCATCCATCATTAACGATCAATGGTCGCGCCAAGGAGACGAAATTGATGTCGCGgattcatcgagaaaaacacAACGGCACCGTAATCGTAGAAAACGCGATTACGAGTGTGAGTCGTGTGGCCGTAAATGCAGTTCGAAGCAATCATTGATGAAGCACATGGAGCAACATCGTATCAAAGACGAGGGGATCGATGGGAGCGATAAATTGCGAAAAAGTAGCTCTGTGCAAATATCCGATAGATCATCCGGTGTAATGTGTAATACCCAACAGTTGAATAAGTCCGCGAGCTTGAGATACGACGAGAGAAACAAGAATGATTCggagaacgatgaaaattctgaTTTCGGTCTCGGCCTTGATTGGCCAGTGGACAGTCACGAGTGTTCgacttgcaaaaaaaaatacagcacGAAAAAATCACTGCTGCGTCACCAGCTATTGCACGAAGAGCCGAATTTCGAATGTGACATATGCAACGTTAAATTTTACCGGAAAGACAAACTAAAGTCACATTATGACAAGTGTTCGGAGAAGAATCCCGATCAGGTTAGAAAATGCAACATATGCGGCGATACTTTTGAGAATAATGAAATGTTGAAGGAACACAGAAGTCGTCACGTCGACGAGGGAATATTAACGGAGGAAGATTTACGCGACATCGAGCCGAGAATGGACGATGGAAAAGAATCGGGGAAGGTCGTACGTAAAAGACGCACGGATATCGTCGGTCTCGAGTGTACCGAGTGCAACAAACGTTACACATCGAGGAAAGGTTTACTCCGACATATACAAGTTCACGAGGGTAAAAAGTATCTCTGCGACATATGCCCCAAGAAATTTTATCGTCGTGAGCATCTGAAAATTCACGTTGCCAAACATAATATGATAAAACCGTACAAGTGTCCACGGTGCACCAAACGTTTCATCAAGGAGGAACAATTGTCGAATCACTTGTCAAAGCACGATCGTACGTTCAAAAAGCCCAAAGAATCCGATACGTCCAAGAGATTTTTGTGTGAAATATGCTCCAAGAGTTTCACTCAATCCACCACGCTTATAGCACATTTGCGAGCGCACAACGGCATTAAACCGTATGTGTGCGAAGTTTGCGCTCGACCCTTCACGACAAACGCTTACTTGAAGATGCACATGAGGACTCATACTCAAGAGAGACCGTACAGTTGCCAGTATTGCTCAAGAGCATTTGCCAGAGCTGATACCCTCGCGAATCACTTGACGTCGCACACAGGCGAGGCCAAGTATCATTGTAAATATTGTCCAAAAAATTTCCGTCGCCTCAAGTCTCTGAAGGAGCACGTCTTCATTCACACGGGCCAACGGCCATACGCTTGTCCGACCTGCGATCGTCGTTTCAATAATAATGGCAGCCGTTACGCCCACAGCAAGAGATGCAAACAGAATCATGTGCAGAATGCGAATCGCGAACATGAGACTATCATGACGACGAGTCctaattttcaaaataccgtTTTACAGCCGATAAGACTGCATCAGTTGACGGAAAGCCATGAATTAATGGCGGAACATGGCGGAGAGCAAGATCCGCATATGCAATTAGTCAAGTCGCAAAATAtcaaaacaataacgataGCAAGGGCAACTGATCAACTTACCGAACCGCAAATGATGCAGCATCAAGAAATTCTTATGCCGCTTATACTACCGTTGACTGTGACGCTCACTGACGTTGACGAGGAAGTTATATTACCCGAAGGCACTAAGATATACACCACAGCTTGA
- Protein Sequence
- MDAVGMDTSEGTHDEDAMEETVPEVCRVCLLAHMIMRDLFVENNVVSLSMKAMSFASVKMIPEDGLPGQVCCDCADKLEAAYEFKLQVEQADNVLRQRYDTLNIKEELFFNEVEVHLEAEQGDDVHSLDVGAHYQATMDSLTAEDMDEEKPTLLKDHLALLEVEKLAKRQSTVEAEHKHDDVMNEETGVSALLQTNDENSPYSHESENNVVELAGCNESYGESVKISSIQDPDGITSEEHNYIMQQGYTLTRNEEQLVTEEGVNLVDNESVNYLSLIDEDISVKDHSNEEETMDNVNSEDKKQSEGVETEKSPSKTRRSKRKLSKRRRTSEEDNYFENLNLSSRLTRSQYEKSGNFYFLCYLCDKQFVSKERLKEHMESHEEVRHALSLKKVEKLRRRSTSPTKAIVESTAIVTTATIAGSNASGKKANKCPYCGKEYLYVISFNKHLKKHEKNKSVTSTDSSFSLKKSEHVETEDSSDFIVQDQSMQIEMNSRIELNNDDNDNAKNENQMETRSPSTKIRRRRSLRNGTSSYSCETCAKHFPSKRELFEHSSEHFIIHKCNTCDREFDGLEKLRRHRTGHVVDGVLSQQDLEDDVYARDFEGKIQNDDVGEMYKSDGLVEIHRDTEVVSVQRNQEDEEGEGNSDHVDTDNSWHLEVQDEIDDRDDIKYIQTNKISDFWPETANKCPIKYSSKKPLIRRTECDEDVAAQFCKYCNLKFATKDSLREHVEHEHTCKTKTFHCTDCNKIFGNELTLRNHLFATDHKTIIHGQQYDPNKRMKRVAARAAQKIIDKIKTENALEDYEDQEEEDKKLENVNELEGLDSHSSSIINDQWSRQGDEIDVADSSRKTQRHRNRRKRDYECESCGRKCSSKQSLMKHMEQHRIKDEGIDGSDKLRKSSSVQISDRSSGVMCNTQQLNKSASLRYDERNKNDSENDENSDFGLGLDWPVDSHECSTCKKKYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKSHYDKCSEKNPDQVRKCNICGDTFENNEMLKEHRSRHVDEGILTEEDLRDIEPRMDDGKESGKVVRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCPRCTKRFIKEEQLSNHLSKHDRTFKKPKESDTSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCARPFTTNAYLKMHMRTHTQERPYSCQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNHVQNANREHETIMTTSPNFQNTVLQPIRLHQLTESHELMAEHGGEQDPHMQLVKSQNIKTITIARATDQLTEPQMMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIYTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -