Hami001808.2
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390720.1:30363837-30365117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00092 0.082 13.5 0.8 1 23 65 88 65 88 0.97 2 12 1.3e-06 0.00012 22.4 1.4 2 23 96 117 95 117 0.97 3 12 6.4e-07 5.7e-05 23.4 2.0 1 23 144 166 144 166 0.97 4 12 3.8e-05 0.0034 17.8 3.0 2 23 172 193 171 193 0.97 5 12 7.6e-05 0.0068 16.9 0.1 1 23 198 220 198 220 0.98 6 12 8.7e-07 7.8e-05 23.0 0.6 1 23 228 250 228 250 0.98 7 12 7.8e-05 0.007 16.9 2.8 1 23 256 279 256 279 0.98 8 12 0.0001 0.009 16.5 0.3 3 23 292 312 290 312 0.96 9 12 3.1e-06 0.00028 21.3 2.8 1 23 318 340 318 340 0.96 10 12 1.5e-08 1.3e-06 28.6 0.2 1 23 346 368 346 368 0.98 11 12 1.1e-07 1e-05 25.8 0.9 1 23 374 396 374 396 0.98 12 12 0.00017 0.015 15.8 2.0 1 21 402 422 402 423 0.96
Sequence Information
- Coding Sequence
- ATGGCGATGCTAGCGAATCTCGATCTGATGAAGCGACCCGTCGAGCCCGTGCGAACGAAAGCTAAAGACAGAAAGAGGACGACTCGGGCGACCTCCGACTCGTCGTCAATCGTACCAAAAGTCGAGAAGAGAATCGTCGTGAATATCAAGGAAGAGTACGAAgtcgacgacgaggaggatTTTCCGCTGGCTTACAACTGCTTCAGATGCGGCATATTTTTCGCGAGCCAGGAACAGATGGACAAGCACGAGCGCCGGGAGCACAAGAACAAACGTCAGAAAAGTACGTGCAAACATTGCGGTCGTGTTTTCGGTACGCTAATCGCATTGCGCAAACACATGAAGGTACACGaggacgatgacgatgacgaggaggaggaggaggaggaggagaaaggtGAGGAAAAATTGGACAAGATCAAATCGGAGTTTCCGTGTGAAATTTGTACCAAGGTGTTTTACAACAAGAGCAATTACAATAAGCATCTGACGCGTCACGACGACGGTGACCTCGAGTGTGAACATTGTCCCAAGAGATTTCGTCTCGAGCGCGATCTCAAAAGACACTCGAAAACTCATTTTTATCCGAGTTACATGTGCAACGAGTGCGGTTACGAGACGACGGTACTCGCGTCCTTGACGGTCCACATGGCCAAGCACACTGAGAAAACCGAGATGCCGTATCAGTGCAACGAGTGCGAGAAAAAGTTTCGCAAAGCCGCCGATTTGCAGGAGCACTACAATATTCATTCCGGCGATCAGCCGTTCGTTTGCCAACAGTGCGGCAAAGCCTTTCATCTCAGACGACAGTTGTCGGCGCATCGTCGAAAATCTCATCCGCAGAAGAAGTCGAAAAAGATCGTCAGTACGGCCTGTGACATTTGCGGCCGTGTCCTCGCCACCAAGAGATCGTTGTTTCGTCACAAAGAGAGCCACAACCCCACCAAGCTCTATCTCTGCGATTTTTGCGGCAAGAGTCTCAGCAGCTCCGAACACCTCAAGAAACATCGGCGCATTCATACCGGTGAAAAACCATACGTCTGCGACATATGCGGCAAGGGCTTCACCgattcggaaaatttgcgcATGCATCGACGCGTTCACACCGGTGAAAAGCCGTACAAGTGCGATCAATGTCCAAAAGCGTTCTCTCAGCGCTCGACACTGACGATTCATCGACGCGGACACACGGGCGAGAGACCGTACGTTTGTAAAATTTGCCATCGGGGATTCTCCTGCCAGGGTAATCTAACGGCTCATCAGAAATCCACCTGCGTCTAA
- Protein Sequence
- MAMLANLDLMKRPVEPVRTKAKDRKRTTRATSDSSSIVPKVEKRIVVNIKEEYEVDDEEDFPLAYNCFRCGIFFASQEQMDKHERREHKNKRQKSTCKHCGRVFGTLIALRKHMKVHEDDDDDEEEEEEEEKGEEKLDKIKSEFPCEICTKVFYNKSNYNKHLTRHDDGDLECEHCPKRFRLERDLKRHSKTHFYPSYMCNECGYETTVLASLTVHMAKHTEKTEMPYQCNECEKKFRKAADLQEHYNIHSGDQPFVCQQCGKAFHLRRQLSAHRRKSHPQKKSKKIVSTACDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSSEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCKICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -