Hami001814.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390720.1:30378483-30381674[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0017 0.15 12.7 0.5 1 23 150 172 150 172 0.95 2 18 1.4e-06 0.00012 22.4 1.3 1 23 178 200 178 200 0.98 3 18 0.00061 0.054 14.1 0.6 1 23 205 228 205 228 0.98 4 18 3.8e-05 0.0034 17.9 3.5 1 23 234 256 234 256 0.98 5 18 4.9e-05 0.0044 17.5 0.5 1 23 262 285 262 285 0.97 6 18 0.0053 0.48 11.1 2.7 1 23 296 318 296 318 0.91 7 18 0.00012 0.01 16.3 2.6 1 23 322 344 322 344 0.94 8 18 2.1e-05 0.0019 18.6 3.7 1 23 350 372 350 372 0.98 9 18 1e-05 0.00092 19.6 0.8 1 23 378 400 378 400 0.98 10 18 0.00017 0.015 15.8 1.1 2 23 569 590 568 590 0.96 11 18 1.6e-06 0.00014 22.2 1.3 1 23 596 618 596 618 0.96 12 18 0.18 16 6.3 3.5 1 23 625 648 625 648 0.92 13 18 4.4e-07 3.9e-05 24.0 2.6 1 23 654 676 654 676 0.98 14 18 0.056 5 7.9 3.1 2 23 682 704 681 704 0.89 15 18 2.7e-06 0.00024 21.5 0.9 1 23 711 733 711 733 0.95 16 18 2.2e-07 1.9e-05 24.9 0.9 1 23 737 759 737 759 0.99 17 18 0.029 2.6 8.8 1.1 1 23 765 787 765 787 0.94 18 18 4.4e-06 0.0004 20.8 0.6 1 23 793 815 793 815 0.99
Sequence Information
- Coding Sequence
- ATGGACGATTTCTTTCGAATTCCAAAATCACTGTGTTACTACATAATGAGGCACCAGCCGCATCGAGAAACACGGAAAGAAAGCAAGGCGGATGCTAATAAGGAGAGAAGAGGAACCCGAGCTTTCACGcggaaaatatcgaacgaCGGTGAAAGCAAGACGATTGAGCGCTCCGCGAACGGACAGTCAGACAGCAGCGGGGAGACTTTGAGAGGGAGGGAAAAGAAGGTTCGCGGGAAAAACGAGATTGTCAAGAATGGAAGTTCACCGTTGGAAGAACCAACGGGAATTCTCGACGACGAGGAAGAATATCGGGAAAGGAAAATCATTGACATCGACGATGTGCCTCTTGATATTCGTCGGATGAAAGCGAGCGCCGGACAACCGGTGGTGAGCCAAGAGCCAgagacgatgaagaaaaaaaagagaaagaaaaagctcGTCAAGTACGAGTGCGCTGTATGCTCGTTGAGCTTTTCGCTCAAGAGACAATACAAACGCCATGCGATCGAACACAACGTCGCAAAAATGTACAAGTGCGACGTGTGCGAGAGAGCCTTCAAGAGGAAATTCGAGCTGAAGACGCACATGGAGCTTCACAGCGGTGTGAAGTTCACGTGTGACGAGTGTAATTTCGTAACGACGAACAAAGTGTCGGTACGGTCGCACGTCAGACGAGTGCACCAACGTGATTTTCGTTACAAGTGCGACGAGTGCGACAAGAGTTTCATGTCGAATTGCGAATTGAAGGATCATCGCACGAGTCATCTCGGGACGAAAAGTTTCATCTGCGAGATATGCGGCAGAGCGTACCTGCAAAAGTCCCATTTGGTCGCCCACAAGCGCACCGTTCACGGTGTCGTGCAGAGGAGTTTGGTGAAAGAGCATCACTGCAAAATATGCGACAAGAAATTCTCCTCCGAGTATATCTTGCGGAATCACGCCGGTGTTCATTCGCGTAAATTTTTGTGCACTCACTGCGGCAAAGAATTCGCTACGAATCACGGCTTACAATTGCACAGCAATATTCACACCGGTGAGAGACCGTTTCAGTGTAAACATTGTTCGAAAACCTTCGCGCGTCCGAATACACTGAGGCTGCATAATCTCACGCACACCGGCGAGCGTCCTTACGTTTGCGATCTTTGCGGACAGAGCTTTACCCAGCGCAGCAGCATGATTGGGCacagaaaaaaacatccgGGCAGTCATCCACCGCCTCCGCCAACGCTGCTCGGCAGgTACAATCCGCTAGATCCGCTAGGGGCGGCATATCTGACGGTTAAGTTAGGTGACGATTACTTTCGTATGCCAAAGTCACTGAGCTTGTTCATGATGAAGCAAGCAGCGccgaacgacgacgacgacgacaggACGACGGCCAACGAGCGGGTGAAAACTGAGAAAAACGATGACATTAACGAGACTGACAAGTCCGAGGACGCGGAGGATCCTCGGGAGGCGGAAAAATCGGAGGATATCGAGAATTTTCAGGAAACGTACAAGCCCGCGGGAGTCCGGAAGAAAACTTTGACGCGCAAGAACACGAGAGTCAAGAGGAAGAAACGGGCAAAGTGCGAGATCGACGAGTTTCACGAAGATACCGAGGATATCGACGATTACGACGGTTTCAACGATTTGGATGACATACCGCTGGATTACAGGcagaaaaaagcgaaatacGGCAACTCGAAGAAACTGCTCACCTGCGAGATATGCTATTTGGTATTCGATCGTAAGAGCAGACTCACGAGTCACATGTTCAAGCACAGCGATTCGAGACCGCACATATGTACCATTTGCTCAAAGGGCTTCAAGACCAGTGCTTATCTGACGAGACACATGGAGGTCCACGACGATACGGCGCAGGAGCACGCGTGCAATCTCTGCGACTTCAAGGCTCGCACGAAGCCCTATCTCAAGATCCATCACATCAGAAAGCACACCGACGATTACAACTTCAAATGCAAAGAGTGCGGCAAGCGTTTCAAAGTGCAATCCGACTATACGACGCACATGAAGGATCACGACACGGAGTCGTGCGTGTGCGACATATGCGGCTCGTCTTACACGAGTAAAAGTTCGCTGTACTTTCACAGGAATTACAAGCACAAGACGAAAGTCAAAGAGTTCCAGTGTGAGATTtgtaaaaaacgttttacgaGCCAGAAGAATCTCGCGACGCACGCGGAGCTTCACAAAATGAAATACGTTTGCGAGCAATGCGGCATGGAGTTCAAATCGAAGTACGGTCTGACGAAACACTTGCGCACGCATTCCGGCGAAAAGTCTTACCTCTGCGCCATATGCGGCAAAACTTTCGGCTGTCTGAGCTCGCAAAAGATTCATCTCTTGACGCACGTCGGCGAGCGACCTTACGTCTGTGACATATGCGGCCAGAGTTTCACGCAGAGGTCACCGATGATGCTCCATCGAAGGAAACATCCGGGTGTCAATCCACCTCCGCCACCGATCAAGATAACTAATCTTCTTCACGGCGTTCAGGACAAAATAATCGTTAACAAGAGCGCGAAAAAAGACGACGCGAAGGACGACGCGAGTGCAAACTGA
- Protein Sequence
- MDDFFRIPKSLCYYIMRHQPHRETRKESKADANKERRGTRAFTRKISNDGESKTIERSANGQSDSSGETLRGREKKVRGKNEIVKNGSSPLEEPTGILDDEEEYRERKIIDIDDVPLDIRRMKASAGQPVVSQEPETMKKKKRKKKLVKYECAVCSLSFSLKRQYKRHAIEHNVAKMYKCDVCERAFKRKFELKTHMELHSGVKFTCDECNFVTTNKVSVRSHVRRVHQRDFRYKCDECDKSFMSNCELKDHRTSHLGTKSFICEICGRAYLQKSHLVAHKRTVHGVVQRSLVKEHHCKICDKKFSSEYILRNHAGVHSRKFLCTHCGKEFATNHGLQLHSNIHTGERPFQCKHCSKTFARPNTLRLHNLTHTGERPYVCDLCGQSFTQRSSMIGHRKKHPGSHPPPPPTLLGRYNPLDPLGAAYLTVKLGDDYFRMPKSLSLFMMKQAAPNDDDDDRTTANERVKTEKNDDINETDKSEDAEDPREAEKSEDIENFQETYKPAGVRKKTLTRKNTRVKRKKRAKCEIDEFHEDTEDIDDYDGFNDLDDIPLDYRQKKAKYGNSKKLLTCEICYLVFDRKSRLTSHMFKHSDSRPHICTICSKGFKTSAYLTRHMEVHDDTAQEHACNLCDFKARTKPYLKIHHIRKHTDDYNFKCKECGKRFKVQSDYTTHMKDHDTESCVCDICGSSYTSKSSLYFHRNYKHKTKVKEFQCEICKKRFTSQKNLATHAELHKMKYVCEQCGMEFKSKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVNPPPPPIKITNLLHGVQDKIIVNKSAKKDDAKDDASAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -