Hami003855.1
Basic Information
- Insect
- Heteropelma amictum
- Gene Symbol
- -
- Assembly
- GCA_959613375.1
- Location
- OY390721.1:16353721-16355197[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-10 1.9e-07 30.8 0.0 2 37 11 45 10 51 0.87
Sequence Information
- Coding Sequence
- ATGTCCCGAAAACCAATCTTGAAATATGAAGAAGAGAAAGTTACACAAGCCATGACTTCGATAAGAACAGGAATGAAAATTAGAGAAGCAAGTCGTGTGTATGGTGTACCTCGATCAACGCTCCAAGACCGACTACATTCGAGGGTACCAGAAGGACCGCGCAAAATGGGTCCAGATTCCGTTTTGACAAGAGAAGAAGAAACTCTGCTGAGCGAGTGGTGTATAAACCTCACAAAATGTGGTTTTCCTTTAAAGCCAGATGATTTACAAAATACGGTGCAAAACATTGTTACAGACGACAACAGACCAAACCCATTTATTAATAATCGTCCGGGAAAGAAGTGGTACTGCGCTTTTATGAAGAGAAATTCTATTTTAAGCCATAGAACACCTGAAAATATATCTAAGGGTCGATCTGTTGTAACAGAAGAAAGCATACGGAAATGGTTTGATACATTGCTGCAATATCTGGAATCGAAAGGAGCTACGGATATACTTGAACATCCCGAACGTATCTTTAATGGCGATGAAACAAGTTTCGTTCTCTGCGCTAAGACAGGACAGAAAATGAAAGCGCCGATACGAGTGTTGTACCTGAAAATACCATTGACTCAAGAATATTATCcgaaataa
- Protein Sequence
- MSRKPILKYEEEKVTQAMTSIRTGMKIREASRVYGVPRSTLQDRLHSRVPEGPRKMGPDSVLTREEETLLSEWCINLTKCGFPLKPDDLQNTVQNIVTDDNRPNPFINNRPGKKWYCAFMKRNSILSHRTPENISKGRSVVTEESIRKWFDTLLQYLESKGATDILEHPERIFNGDETSFVLCAKTGQKMKAPIRVLYLKIPLTQEYYPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -