Hrot006067.1
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_951394025.1
- Location
- OX596010.1:82155352-82158624[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 2.7e+04 -8.2 6.4 15 19 190 194 189 194 0.82 2 19 0.14 1.8e+03 -0.4 0.4 4 10 225 231 224 231 0.95 3 19 1.1e-08 0.00014 22.3 14.5 1 18 239 255 239 256 0.98 4 19 0.0004 5.4 7.7 18.7 1 19 292 311 292 311 0.94 5 19 0.38 5.2e+03 -1.8 1.0 6 10 336 340 335 340 0.92 6 19 3.2e-07 0.0044 17.6 11.4 1 19 346 364 346 364 0.99 7 19 1.6 2.2e+04 -3.8 0.2 12 15 379 382 379 383 0.75 8 19 1.3 1.8e+04 -3.5 0.4 1 8 389 395 389 396 0.59 9 19 8.4e-09 0.00011 22.7 10.0 1 18 399 416 399 417 0.96 10 19 0.32 4.3e+03 -1.6 0.4 1 5 426 430 426 435 0.75 11 19 7.1e-05 0.96 10.1 13.5 1 18 451 468 451 469 0.98 12 19 3.6e-08 0.00049 20.6 14.1 3 18 480 495 472 496 0.85 13 19 0.11 1.5e+03 -0.1 11.0 9 18 541 550 532 551 0.89 14 19 0.091 1.2e+03 0.2 4.7 4 11 565 572 563 573 0.85 15 19 3.7e-06 0.049 14.2 5.1 1 11 640 650 640 651 0.96 16 19 2 2.7e+04 -6.6 3.3 5 10 666 671 664 671 0.53 17 19 0.0087 1.2e+02 3.4 10.3 3 18 680 695 679 696 0.94 18 19 2 2.7e+04 -6.9 3.1 10 13 703 706 702 706 0.68 19 19 5.4e-06 0.073 13.7 11.6 1 16 747 761 747 768 0.86
Sequence Information
- Coding Sequence
- ATGTCGTCCAAAGCAGGAAACCCTTGGAAAATCCCAGCTGCAAAGCCCACCAACAGCAAAGGAGCGAAAAAGGTGCAGAAAACCCAGCAGCAGCCCCAACAAAGTCCGAGCGATGACTCTGGCTCTTCGCGGTTCAAAGAAGAGCAAGCCAAGAATATTGCGGCGGCGAAAAAGTTGGTGGATCACTACGTGTCCAGTTCCGAGGACGAGGGTGAACTTGACGAGAAAAGCCTAATAAACTCGATATACCAACACTACAAGCAGCCCACCACTGCCGGcacgcaacaacaacaactaacgAAAACGGCCAGTTGTCTGGAGACAGTATTGCACTCTGGGGCAGCGACGTGTCTTATCTGCATAGGCTCTATACGCCGCTCCGATGCCATTTGGTCATGCAGACATTGCTATTGTTTCTTCCATCTTAATTGCATCCGGCGCTGGGCTAATGACAGTGTAGCCCAACTCAAGAAGACACAGGAAGTACAGCAGCACAGCGATCAGGGTTACTACAATCACCTGGGTGAATATGTTCAACCGAAGCGAGTGCGTCCTCTGCACTGGTGCTGTCCTCAATGCCGCGAGGAATACGAACCAGCCGAACGTCCCTCGACTTACGAATGCTTTTGCGGCAAGGAGCAAGACCCGCAGTCGCAGCCCTGGCTAGTGCCGCATTCTTGTGGTGAAATCTGTGGCAAACGACTGCAGCCAGATTGTGGCCACAAGTGCATGTTGCTGTGTCATCCGGGTCCATGTCCGCCGTGCGCCCAATACGCTGTGACTTCTTGTTTGTGTGGCAAGATGCCGCCTAAGTCGGTGCGCTGCACGGACAAAAGTTGGCACTgtacacaaaaaTGTAAGGAGCGATTGCCATGTGCCGAACACTGTTGCAATCAGATTTGTCATGAGCCCGGTCAATGCCCACCATGCACTAGCACTAGTATGCAGCCTTGTTTTTGCGCACGAGAATCGAAGAAACGAAGTTGCTCGGATCTCAAGTGGCATTGTCAAAAGGTGTGTGGTTCGAAATATCCTTGTGGAATTCATAAGTGTCGACAAGTGTGCCATTCCGATCTATGTGGTGAATGTCCATTGGGACTACCGCGATCGTGTCCATGTGGCAAATCCaaaaaagAGGGCCCATGCACGGAAGTGGTTGACTCTTGTGGCGATACGTGCCAGAAATTGCTATCGTGTGGAAttcacacatgcacacagCGCTGTCATCGAGGCGATTGTAATTTGTGCCTGGTCGTTACGAAGCGAAAATGCCGTTGCGGCATGCACGAGAAGGAACTGCCCTGCTGGAAGGAATTCACATGTGACACCAAATGCAAGCAAATACGCGATTGCGGTAAGCATGCATGCAATCGGAAGTGCTGTGATCTTCGCTGTCCGCCTTGTGACAAAGTCTGCGGGAAGTCGCTGTCATGTAAAAAGCACAAATGCCAATCGATCTGCCACGAAGGACCTTGCTATCCCTGCGAACGCAAGACTCAGGTCAATTGTCGTTGCGGCAAAACGTCCAAAGATGTGCCATGTGGACGAGAACGCACGGCGCGTATCATGTGCTTGGAACCTTGTCGaaTCCCTTCGAAATGCCACCATCCAACCAAACACCGTTGCCACAAGAACGACTGTCCACCGTGCAATCAAAAGTGCGGCCTACCAAACGATACCACTGGTTGCGCCCACATTTGCGAAGCTAGATGCCATGCCGCCATTGCAAACAAGATCACGGCGAGTCCTACAAGCATATGGGAACCAACGAAGAAGTTTGCATTTAAGAGCCAACCACACCCCCAATGCGAACGAAAAGTGACGGTAACTTGCATTGGTGGTCATGAGGTGGCCGAATGGCCTTGCTGGAATTCAAAGCCAACCTCTTGTCAGCGCAACTGTAATCGGGCCCTGCGCTGCGGCAACCACAAGTGTTCTCTGGTTTGTCATGCTGTGGACGATTTGAAGGATATGAAGGAACAGAAAAGTTGCTCGTCATGCCAAGAAGGCTGCGCTATACCACGTCCAGCAGGTTGTATCCATGCATGTGCCGGGGCCTGTCATTTGCCGCCGTGCTATCCTTGCAATGTTAACATCAAAACCAAATGCCACTGCGGCTTGACTCAGGTCATCTATAAGTGCTCAGAGTACTACAATACAGAGGGCACCGAGTCCGAAATATCGGAGCGTCAGGAGCGTTTAAAGTGTTGCGGCAATCGctgtttaaaaaatCTTCACTGCGGCCATCGCTGTACTATTCCTTGCCACTCGGGGAAGTGTCCAAATCCCGAAGATGTATGCCGCAAAAAGGTGCGCATCTTTTGCGAGTGCAAGCGCCTGAAGTCCGAAGTGTCTTGCGATAAGCATCGCAATGGTGGCCTCAAGGCGCTGCCGTGCGATGAAAATTGCTTGGTGACACGCTCAAAACTCGAACAGCTGCAAAAAGACGCAGCTGCGAAGTTGCAATTCGAAGAGGAAGAACGCAATCGCTTGGAAGTGGAGCAGtttgaaaagaaattcaacAGCAAGCGCAAGCCCAAGGAACGCAAAGTGCAGGCTGAGCAGGTTAAAGGCGAAATCAATTGGAAAATGGTGGCTATATACGCTGGCATTTTGCTGGCTATTTTACTGGCCGTTGCCTTGGCCTTCTATGAAGAAAACTGA
- Protein Sequence
- MSSKAGNPWKIPAAKPTNSKGAKKVQKTQQQPQQSPSDDSGSSRFKEEQAKNIAAAKKLVDHYVSSSEDEGELDEKSLINSIYQHYKQPTTAGTQQQQLTKTASCLETVLHSGAATCLICIGSIRRSDAIWSCRHCYCFFHLNCIRRWANDSVAQLKKTQEVQQHSDQGYYNHLGEYVQPKRVRPLHWCCPQCREEYEPAERPSTYECFCGKEQDPQSQPWLVPHSCGEICGKRLQPDCGHKCMLLCHPGPCPPCAQYAVTSCLCGKMPPKSVRCTDKSWHCTQKCKERLPCAEHCCNQICHEPGQCPPCTSTSMQPCFCARESKKRSCSDLKWHCQKVCGSKYPCGIHKCRQVCHSDLCGECPLGLPRSCPCGKSKKEGPCTEVVDSCGDTCQKLLSCGIHTCTQRCHRGDCNLCLVVTKRKCRCGMHEKELPCWKEFTCDTKCKQIRDCGKHACNRKCCDLRCPPCDKVCGKSLSCKKHKCQSICHEGPCYPCERKTQVNCRCGKTSKDVPCGRERTARIMCLEPCRIPSKCHHPTKHRCHKNDCPPCNQKCGLPNDTTGCAHICEARCHAAIANKITASPTSIWEPTKKFAFKSQPHPQCERKVTVTCIGGHEVAEWPCWNSKPTSCQRNCNRALRCGNHKCSLVCHAVDDLKDMKEQKSCSSCQEGCAIPRPAGCIHACAGACHLPPCYPCNVNIKTKCHCGLTQVIYKCSEYYNTEGTESEISERQERLKCCGNRCLKNLHCGHRCTIPCHSGKCPNPEDVCRKKVRIFCECKRLKSEVSCDKHRNGGLKALPCDENCLVTRSKLEQLQKDAAAKLQFEEEERNRLEVEQFEKKFNSKRKPKERKVQAEQVKGEINWKMVAIYAGILLAILLAVALAFYEEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -