Hrot000866.1
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- -
- Assembly
- GCA_951394025.1
- Location
- OX596010.1:10151403-10155788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.6e-06 0.00037 21.4 1.0 3 23 256 276 255 276 0.97 2 11 0.00034 0.027 15.5 1.3 1 23 282 304 282 304 0.98 3 11 0.0003 0.024 15.6 2.2 1 23 310 332 310 332 0.98 4 11 0.0081 0.65 11.1 1.5 2 23 339 361 338 362 0.95 5 11 0.0049 0.39 11.8 2.2 1 23 371 394 371 394 0.93 6 11 0.00017 0.014 16.4 2.4 2 23 699 720 698 720 0.96 7 11 0.0083 0.66 11.1 0.2 1 23 732 755 732 755 0.95 8 11 0.00029 0.023 15.7 0.5 1 23 760 783 760 783 0.97 9 11 0.00053 0.042 14.9 0.5 1 23 788 810 788 810 0.98 10 11 0.00021 0.017 16.1 1.5 1 23 816 838 816 838 0.99 11 11 0.0012 0.1 13.7 0.4 2 23 872 894 871 894 0.88
Sequence Information
- Coding Sequence
- ATGCTTAAAATCATTCCGCCAACTACTAATTGTGGTTGCGGGTACTTCAAGTCCAAATGTGCGGAAATACATTACCAAACGTCGGATTTctcaattttgtgtattttttgtggCCTGACCACACTCAGCTATATCGATTTCGTGGAACACTTCCGCAGTCTGCATTTCGATGACTTTGCTAAGACTTTGCAAAGCACGGCGGAGCCAGTGGTAACCACCATCTATGAGGAAAGTACAACGACGTCCAAGCGCCTCCGCCATGTGGATCCGCTTGAGTTTGGCGATAGAGAAACAACTGAAACCGCCGAGGAGCTAATGAAGACGGAAGGCGGTGATACAATCCAAATGTCATCAGAGTCGCCAGTCGGATTTCTGAGCAGTAGTTTTGAACAAGCAGCTAAAATTAGTGGTGATGATGAAGCATTTAATGAATCGGACGATGAGTACCTTATATGCAAAGTCAAAGTCGAAGAGTCGGATCTACAAGCAGCCAACCCTTCCAAACCACGAAAACCTTATAAGCGGCAGACAGCAGCTATTCTGGAAGACAATGAATTAGGCCTTCACAACGAACATTTCCAGACTGATGATTATCCTAAACAAACAAGCGACTGCGAGGACGACAATGATGATAATTGCAATAATAGCGACGCTTCCAAGCCGCCTACCGACGAGGAGGAAATCGACTGGGCCAAGCCCTATGAACCCAATCTGCTGAAGAATCATGAAAAACGACCCTATAAGCCACGCAATAAACCCAACATTTGCTCATACTGTGGGCGCACGTTCCGGCGTCGTTATCAATTGGACACACACCTGAATATTCATACGGGCTCCAAGCCGCACCAGTGCGATGTCTGCGGCCGACTATTCCGGGCGGTCACCACGCTGACACGTCATCTCAATACGCACGAGGAACGCGAAGCATACAAGTGCAAATTCTGTGTCAAAGCCTTCACCCATAAAGCGGCTCTTTTGAGCCACGAACTGCGCCATACACAAGAGCGAAGTGTACCTTGCGATGAGTGTGATAAGCTCTTTTACACCAGCAATCAAATGGACACACACAAGCGAAAGGTCCACCATAAGGCCGATGATGCAGCTCTGCCATTCGCGTGCGATCTATGTACGAAGCGTTACCGAAGTGCCTCCATGTTGAGTACGCACAAATTCAAGAAACACTATAAAACGGCAAAATTCTCCTGCGAACAGTGCGATACAGGAAGAGAGCAATATGAGAGGGAAACGTGTCTGCTGGAGGAAGACGATTCTCAATGTGGCTTTATTTTCTTCAACGCGGAGACGCTTTTGCTTAAGTTCTTTTGCACCTTCTGTAGAGAAACTTACGACAATATCCATTATTTCTGCGAGCATTTGAGTGACCACATCAGCGAAACTACAAACGGCACTAAGGCCGACCAGGAAATGTTGCCcgacgaagaagaagaggaagtggagaaaattgtattaaagtCAGACAAGGGCTCGCTTTTGATCGACTCCGGAGACGAAGTGGATTTGAAGGAATTCGAACAAAGCATTGAGGAGTTGGATGAAGCCGAAGAAATTGCAGCTGAAGTAGCAGCGGAAATGCGACAGGAAGCACTTGATTGCGGTGATGGTTTTGCGGATGAGGATAATAGCTGCTCTAGCGACTTTCGCGGCTATTCTGAGAATGAGACGAAAGGTAGCATAGCAAACGAAAACGGCGATACGACACTTGAAATCGGAAAAGTGTCttcaaaaaacttaaaagAGAAAACTGTACAtggtaaaattattatttcggACAAGGTCAAAAAgCTTCGGGGATTGAAACCTACGAAGAAGGAGAAAAGGGTTACTACCGTTAAAATAATTGCTGTCAAGAATAGAATTTCCGAgttgtatgagaaaatcaaATTGGAAGAGGAGAAACGTTTGAAGACAGACATCTATGATGACGCCGATGAAAGCCAATCCTCGTCGAACGATAGTGATGACCAGGAACCGGCTCCTAAAATAATTGGTCAGACCGTTATTACGCGAGTACCGAATGAAAGCCCAGATGAAAGGCCGATTCCTTACCATCAAAATACCAATCCAAAGGATTGCATTTGCCCCGCCTGCGGTAAACGGTTTCGCAGCTCGTTCAGTCTTTCCATACACAAGCGCTCACACTACTTGGAATCGaatagtaaaattaaattggccCACCAATGCGCCGATTGTGAACAACTATTCAACACAATCGCCGACCTCAGGGATCACATACAAGGCCAGCACTACCCGGACGGTTTCATCTGTCAAATTTGCAATAAGAAACTGACCAGTTTGCTTTTGCTGGAGAGCCATATGCGTAAGATCCACCTGCCAAAGCCtttcaattgtaaaatttGCGGTAAGAATTACGGAAGTAATGCTCGCTTCGAAGAGCATGTACGTAGCCATGCCGAAGAACTAAATTACAAATGTCGCATCTGCGGTAGGAAATATTCCACCGAACGAATTCTAATGCAGCATATGCGCAACCACAAAGAACAAATTCCGGATTGCTGCGTCGTGTGTGGCAAGATGACACTGCGCATAACACAACACATGAAGATCCATACGCCGCGCCCTGAACGAATACTCAGTTGCTCGGCTTGTGGCAAAGTATTCAACTTTAGTTCCGCTCTAAGCCGTCATTTCGCGCTCTTTCATAGGCTGCCTCGCCCAGCACCCAATCCTATTAGGGATCCTGCAGCACCAAAACGCAAAAGAAAGCCGCGCAAAAGCAGTTCAAAAAAGTCGGAAGCGAAAAAGGAGCCGCCGGTGGAGAAAATTGACACTGAGTGTGTAGAATACAAGGAGGAGGAAGCCAAAAGAGTGATTGTTGAACTGATTCAGAATGCCACGTATCAGTCATTCTTGCCCGAAAACTACTCGCAGGTATTGGAAACGACTCCGCCAATTGCACGCGAAGAGACTATTTCCGCCATAAATAGTATCGTCCACGACAGTTAA
- Protein Sequence
- MLKIIPPTTNCGCGYFKSKCAEIHYQTSDFSILCIFCGLTTLSYIDFVEHFRSLHFDDFAKTLQSTAEPVVTTIYEESTTTSKRLRHVDPLEFGDRETTETAEELMKTEGGDTIQMSSESPVGFLSSSFEQAAKISGDDEAFNESDDEYLICKVKVEESDLQAANPSKPRKPYKRQTAAILEDNELGLHNEHFQTDDYPKQTSDCEDDNDDNCNNSDASKPPTDEEEIDWAKPYEPNLLKNHEKRPYKPRNKPNICSYCGRTFRRRYQLDTHLNIHTGSKPHQCDVCGRLFRAVTTLTRHLNTHEEREAYKCKFCVKAFTHKAALLSHELRHTQERSVPCDECDKLFYTSNQMDTHKRKVHHKADDAALPFACDLCTKRYRSASMLSTHKFKKHYKTAKFSCEQCDTGREQYERETCLLEEDDSQCGFIFFNAETLLLKFFCTFCRETYDNIHYFCEHLSDHISETTNGTKADQEMLPDEEEEEVEKIVLKSDKGSLLIDSGDEVDLKEFEQSIEELDEAEEIAAEVAAEMRQEALDCGDGFADEDNSCSSDFRGYSENETKGSIANENGDTTLEIGKVSSKNLKEKTVHGKIIISDKVKKLRGLKPTKKEKRVTTVKIIAVKNRISELYEKIKLEEEKRLKTDIYDDADESQSSSNDSDDQEPAPKIIGQTVITRVPNESPDERPIPYHQNTNPKDCICPACGKRFRSSFSLSIHKRSHYLESNSKIKLAHQCADCEQLFNTIADLRDHIQGQHYPDGFICQICNKKLTSLLLLESHMRKIHLPKPFNCKICGKNYGSNARFEEHVRSHAEELNYKCRICGRKYSTERILMQHMRNHKEQIPDCCVVCGKMTLRITQHMKIHTPRPERILSCSACGKVFNFSSALSRHFALFHRLPRPAPNPIRDPAAPKRKRKPRKSSSKKSEAKKEPPVEKIDTECVEYKEEEAKRVIVELIQNATYQSFLPENYSQVLETTPPIAREETISAINSIVHDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -