Basic Information

Insect: Heteromyza rotundicornis
Gene Symbol: ZIPIC_3
Assembly: GCA_951394025.1
Location: OX596012.1:22340522-22341724[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 8.6e-05 0.0069 17.3 1.6 2 23 113 135 112 135 0.96

2 7 0.00016 0.013 16.5 1.3 1 23 139 161 139 161 0.97

3 7 3.7e-05 0.0029 18.5 2.2 1 23 167 189 167 189 0.97

4 7 1.5e-05 0.0012 19.7 1.9 1 23 195 217 195 217 0.98

5 7 7.1e-08 5.7e-06 27.0 2.4 2 23 225 246 224 246 0.97

6 7 4.5e-06 0.00037 21.4 2.2 2 23 253 274 252 274 0.95

7 7 0.0033 0.27 12.3 4.3 2 19 286 303 285 305 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	8.6e-05	0.0069	17.3	1.6	2	23	113	135	112	135	0.96
2	7	0.00016	0.013	16.5	1.3	1	23	139	161	139	161	0.97
3	7	3.7e-05	0.0029	18.5	2.2	1	23	167	189	167	189	0.97
4	7	1.5e-05	0.0012	19.7	1.9	1	23	195	217	195	217	0.98
5	7	7.1e-08	5.7e-06	27.0	2.4	2	23	225	246	224	246	0.97
6	7	4.5e-06	0.00037	21.4	2.2	2	23	253	274	252	274	0.95
7	7	0.0033	0.27	12.3	4.3	2	19	286	303	285	305	0.96

Sequence Information

Coding Sequence: ATGCCAAGTATAtgctgcatttgccgatttacTATACGAAAAGGGAAGAAAATATTCGAAGAATGCATAGGAAAACCACCGATACTTCTCAGTGAGCTCATTCTAGAGTGTACTGGACTGCATCGCAAACTTTCCATTGATAGTGAACTCTATAATATAGACACGAAAGTAGTAATGGAAGACGTCCCAACTTTCTCGGAACCGAAACTCTTGAATAGCCCCACAAAAACAAGTGACGATGAATTCGAGCGGCTTGTCACTATTGAATTAGAATCTGATGACGATAGTGACTATGTAGAACAGAAGCATATTAAAAAAACGGAACGAGTAGAATTAAAATGTTCCGAATGCGATCAGAGTTTTCAAAACCAACGAAAGTATCGCGCTCACGTAAAAAAAGAGCATTCCACCGGTTTCATTTGCGATCAATGTGGAAAGAAGTTGACCTCGTACTCTGGTTTTATCACCCATCGTCAAAAGCATAACCCTGTTAAGGAATTTGAATGTCCCGAATGCGGTGAGCGATATCATCTCAAAAGCAAACTAAAGCATCACATGGCCTGGCACACCGGCGAGAAACCGTTCCAGTGCGATATCTGCGACAAGCGATTCGTTCATCGTGTCGGTCTGTACACTCACAAACAGATTCACGACAATCAAACGCGACGTATTGAATGTAAAGAGTGCGGCTTCAAATTTCGCACCAATGCGCATCTACAGCGACACATGATGACGCACACTGGGGCCAAACCCTGCAGTTGTCCCATTTGCGGCAAATGTTTCGCGCAACTCTACAATATGAGGGTACACGTACAGGAACACGAGCATCCTGGTAGCAACCGCCGGCGACGTCTTAAGTGCAAAAAGTGCTCCCGCACATTCACCAACAATAAGAACTACGAAGAACATTGCCAGAGCTACGAATGTCAAGCTGCCGAATGA
Protein Sequence: MPSICCICRFTIRKGKKIFEECIGKPPILLSELILECTGLHRKLSIDSELYNIDTKVVMEDVPTFSEPKLLNSPTKTSDDEFERLVTIELESDDDSDYVEQKHIKKTERVELKCSECDQSFQNQRKYRAHVKKEHSTGFICDQCGKKLTSYSGFITHRQKHNPVKEFECPECGERYHLKSKLKHHMAWHTGEKPFQCDICDKRFVHRVGLYTHKQIHDNQTRRIECKECGFKFRTNAHLQRHMMTHTGAKPCSCPICGKCFAQLYNMRVHVQEHEHPGSNRRRRLKCKKCSRTFTNNKNYEEHCQSYECQAAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00797966;
90% Identity: -
80% Identity: -