Hrot008867.1
Basic Information
- Insect
- Heteromyza rotundicornis
- Gene Symbol
- grau_2
- Assembly
- GCA_951394025.1
- Location
- OX596011.1:17846177-17848376[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.6 49 5.2 0.3 2 23 274 296 273 297 0.93 2 10 0.12 9.6 7.5 1.8 6 23 305 322 304 322 0.99 3 10 0.001 0.081 14.0 3.4 1 23 328 351 328 351 0.93 4 10 7.7e-05 0.0062 17.5 0.3 1 23 359 381 359 381 0.96 5 10 0.00037 0.03 15.4 0.1 1 23 386 409 386 409 0.96 6 10 0.14 12 7.2 0.0 2 23 415 436 414 436 0.95 7 10 6.9 5.6e+02 1.9 6.1 2 23 445 466 444 466 0.90 8 10 2.5e-05 0.002 19.0 0.2 1 23 473 496 473 496 0.96 9 10 1.9e-06 0.00015 22.6 0.2 1 23 502 524 502 524 0.98 10 10 1.4e-05 0.0011 19.9 4.2 1 23 530 553 530 553 0.98
Sequence Information
- Coding Sequence
- ATGATTTGTCGGCTGTGCCTGAACGAATTGGACGAGGTAAtaaacattttcgatgaaatcGGTGTGGAATTGATGGTTTGCAGCACACTATCCAAATACTTCTGGTTCGAGCCCAAAAGAGATGATCCCATTTCCACGGCGATTTGCAATCCTTGTTGGATCCATGTTTCCAATTTCCACGAATTCTATTCGACTGTTGAGGAGGCGCATCGCAGGCTCACCGAACGTTTCTCTGTTAAAAATGAAGACAAGCCCCGAAACCGTAGATTTTCAACGAATAACTCCGTGCCCACCAAGCATGAACCGACGGAAGACCCAGAAGACGAAgaagaattccatttcaaagttTTGCTGGGCGATGAGTTGTCGCCAGGCATTTATCATGAAACACTCTCCGAAACGCCCTCCGAAAATGCGCTAAGTGACAAAAAATTTGAGGACACCTTCGACGGGGAGGTGTTTATGGACAACATACTAGATGGCATTGTAGAGAACGATGACCAAGATAAACTTGAACCCTTGGAAGAAAACGAATCGCGGCGCTCTACGCGAGCCAATACCAGAGCAAACGCTAGCCATATATCCAGTACTCAGAAAGAAAGTGATGAATCTCACAGCGAAAAGCTTGAAGGAACTCCGCTGAAGAAACGTAGAGGACGACCACCGAAAAATTCTGTAGATCATACGAAGGTTTGTAGTGTCAAGAAATCCAAATCACACAAAACAACTACTGCAAGCTGCTCGGCCGTCTCACCCAACTCAACGTACGAGGCAAAAATGCGCGAAGTCGATGCGAAAATAGCTGAGCACATGCGATTAATATGCGACATTTGTGCGCTGGAACTGCAGACCTTCGCCCAATTGCGTCAACATATCGAGAAAATGCACCACTGTAAGGGATATGCGGTTTGCTGCAGTAAAAAATTCTACAAGCGAGTACTGCTAATGGATCATATAAAAAAGCATATAAACCCCGACTGTTACAAATGCGAGGATTGCAACAAGATCTTTGCCGACAAGCAGTGCATGAGAAATCATTTCCTGCTCAAGCACCAGCCGGACGAGGTGAAAACATTCGAATGCGACCGTTGTCCGAAGAAATTCGCCAAACCGTATTTGTTGGAACAGCATCGTGTGGTACACGAAGAGCGCTCCCATATTTGCGATGTTTGTCAGAAGGGTTTCGCTACGGCCACTCTGCTCGGCACTCACATCAAAATCATCCACACGAACTATGGCACAATGTGCGATATTTGCGCCAAGGTAATACGTGGGCGGGCTGCCTTCGCCAAGCATCAGTTGGAACATACGGGCGTCACCCTGCCCAAAGTGCAATGCGACAAATGCGGCTCTTGGCACAAGGACAAATACAGTTTGCAGAAGCACAAGCGGCGCCATAACGATGAAGGCACTTTGCATGTTTGCAATATTTGTGGGAAAGTGGCGCCGAACCGCAGTGCCCTGCTCAGTCATCAGCGTTATGTGCATGCCTCGGAGAGGACTTATGAGTGTGGCGTTTGCAAGAAGGCCTTCAAAAAGCCAATCAACTTGAAGGAGCACATGGCAATGCATACAGGCGAAGTCCTATACAAATGCCCATACTGTACAAAGACCTTCAATTCAAATGCGAATATGCATTCTCATCGCAAAAAAGTCCATCCCAAGGAATTCGAAGAGGCACGCAAAAATCGTCGAGAAAACGCCTCGAAGTCCGAACCAGCGCCACCGATAATAAAAGCCGTAACCGACATTCCGGCAGATTCAATGTCACACGTGATAACCATCAAAACCGCGCACGACAACGAAACGCACAACATCTTAGTGACAACAAGCGATGACTTCAGCGACCACGATAACACCAACAGTATTATTTTTACAGTTAATTGA
- Protein Sequence
- MICRLCLNELDEVINIFDEIGVELMVCSTLSKYFWFEPKRDDPISTAICNPCWIHVSNFHEFYSTVEEAHRRLTERFSVKNEDKPRNRRFSTNNSVPTKHEPTEDPEDEEEFHFKVLLGDELSPGIYHETLSETPSENALSDKKFEDTFDGEVFMDNILDGIVENDDQDKLEPLEENESRRSTRANTRANASHISSTQKESDESHSEKLEGTPLKKRRGRPPKNSVDHTKVCSVKKSKSHKTTTASCSAVSPNSTYEAKMREVDAKIAEHMRLICDICALELQTFAQLRQHIEKMHHCKGYAVCCSKKFYKRVLLMDHIKKHINPDCYKCEDCNKIFADKQCMRNHFLLKHQPDEVKTFECDRCPKKFAKPYLLEQHRVVHEERSHICDVCQKGFATATLLGTHIKIIHTNYGTMCDICAKVIRGRAAFAKHQLEHTGVTLPKVQCDKCGSWHKDKYSLQKHKRRHNDEGTLHVCNICGKVAPNRSALLSHQRYVHASERTYECGVCKKAFKKPINLKEHMAMHTGEVLYKCPYCTKTFNSNANMHSHRKKVHPKEFEEARKNRRENASKSEPAPPIIKAVTDIPADSMSHVITIKTAHDNETHNILVTTSDDFSDHDNTNSIIFTVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -