Basic Information

Insect: Heteromyza rotundicornis
Gene Symbol: -
Assembly: GCA_951394025.1
Location: OX596013.1:42353495-42356306[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00012 0.0096 16.9 4.6 1 23 324 347 324 347 0.97

2 8 1.7e-05 0.0014 19.5 1.2 2 23 357 378 356 378 0.96

3 8 1.7e-05 0.0013 19.6 0.5 2 23 388 410 387 410 0.95

4 8 2.9e-05 0.0023 18.8 0.1 1 23 416 438 416 438 0.98

5 8 7.8e-06 0.00063 20.6 1.0 1 23 444 466 444 466 0.98

6 8 0.0027 0.22 12.6 0.2 1 23 471 493 471 493 0.96

7 8 1.7e-06 0.00014 22.7 1.4 1 23 499 521 499 521 0.97

8 8 0.021 1.7 9.8 3.7 1 23 527 550 527 550 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00012	0.0096	16.9	4.6	1	23	324	347	324	347	0.97
2	8	1.7e-05	0.0014	19.5	1.2	2	23	357	378	356	378	0.96
3	8	1.7e-05	0.0013	19.6	0.5	2	23	388	410	387	410	0.95
4	8	2.9e-05	0.0023	18.8	0.1	1	23	416	438	416	438	0.98
5	8	7.8e-06	0.00063	20.6	1.0	1	23	444	466	444	466	0.98
6	8	0.0027	0.22	12.6	0.2	1	23	471	493	471	493	0.96
7	8	1.7e-06	0.00014	22.7	1.4	1	23	499	521	499	521	0.97
8	8	0.021	1.7	9.8	3.7	1	23	527	550	527	550	0.97

Sequence Information

Coding Sequence: aTGACAGGATTGGAAGCGGCGGTGGACGGCCATTCAGCAGCAACGGACATTGAAGAGTGGCGCGGTTGGTGTCGTTTGTGCGCCAAAGAGGACGCAGGGAACATAAGCGTTTTCTTTAAGGACGAACAGCAGCCAGGTGGAGCGGGGAGTGCAACAGCTGGATGCTCTAATGGAGACTTGAGTTTGGCCACAGCAATTGAGAAATACTTCTGGGTTAACATAACCCGCGCCGATGAAGAGCTGCCAAGAATGCTCTGCACCGAGTGCTTCTCGCTGGTCACATCGCTGGTGAATTTCTCGGAGCGCGTCTCCAAGGTGCAGCAAATGTTTTGTACACTCCAGCATGAGTCCTCCGCGACGAAAGCGAAATTAGACTTGCATGGCATTCGCCTCAAATACGGCCTGCTGGATGAGGATCGCGAGCATGTGCTCATGCAGCAAACACTGCCGGAGGTCCACTATTACGAGTCGAAACCGAAAATCAACGAATTAGAGGAGAGAATGTTCGAGCCGGCAGCCACAATGAACCCGCTGGAGCAGCCGCGCATCAggattaaaatcaaaaaagaggACATTCTCGATGAGCGCAATAACGGCGAGGACAACGAAGACGATGATGAGGAAGATGAGGACAATGACGAAGACCCGTTTCACGACGAACTGGACGAAGAAGAGATGGACGAGGACGATGAGGAATTCCTACCCGAGAAGCGTGCGAAAGACGAACCGCCGACGACAAAGCAGGCAGTCCAACAAACCGAAATAAAGACAGAACTGCCCAATCAGATCGTCGACGATGACAAAGAATCACCAAAGAAGCGTCGACGCCGGCACAGCAAACGCAAGCGCTCCCCCGTCACGGCAGACGACGACCACGATGAGAAATCCGATGCTGAGCCCGAAACCGCCGAGGAGGCTGACTTGTACTCACCAACTGCCGCGAAAAAGTCGCCAGACTCCGAGGGCATCTTTGCCTGCACGGAGTGTCCGCGCAAATTCAAGCGTGTTCAGCACTTCCGTCAGCACATGAAACGCACCCACTCGAAGCTGACTCCGATGCCGGCCTTGCCCTGTTCGCAATGCACGCGCGTCTTCACCACGCCCCACCAGCTGGAGAAGCACGAAAAGGTGCACTTGCCGCTGAAGCTGAAGAAGGTTATACCCTGCCCGTATTGCGATAAGAAGTTCACGTCGAGTACGCTGGTTCAAACGCACATCAAATACACTCACATGAACGAGCGGCCGTTCATTTGCGAAGAGTGTGGCGTTGCAGTGCGCACCAATGCCACGTTGAAGACCCATATGCTGACGCACACCGACTATGCGCCGTTCGAGTGTGAAGTCTGCAAGAAgggattcaaaaatcaaattcgTTTGAGGAACCATATGGAAACTCACGATCCTAATAAGCACATTTGCGCCGAGTGCGGCCTGCAGCTGAATTCACGTGCCACCCTCAACCGGCACCTGTTGGTGCACTCGGACGAAATGCAGCACAAATGCGACTACTGTGGGCGCGCCTTCAAGCGCGCCAAGGCCCTTAAGAATCATCTCATCTTGCACACAGGCCTCAAGCCGTACTCCTGCGACTTCTGTGATCGCACTTTTGCCAACGGTTCGAACTGTCGCTCTCACAAGAAGAAGGCTCACCCGGAAGAGTTGGCCGCCCTCGAGGCGGCCGGCGGTGGCAAGATGTACACGCGCAATATTCCCAAGCTGGAAGCGCTGAAGGCGGTCACCAAAGCAGCTGACAATCTGGCGCCAGTGGTGTCCAAACAAAGTGGCCGCTTTGCATTTGGCAAAAAACCGAAACCCCTCAAAGAAGAACCCGCCGAGAAAGCAccaaaaaacaacagcaacaacaagctGACAGCAATAATAACCACACCCACGTCGAGCACGGAAATCGAGTTGACTTCATTGCATTCGACAGTGCCCAATGCGGCCTTGATGTCCAGCAGCGGCGGCGTTGGCGTaagcgccaacaacaacagccacaacaatATGGCCGCAATACCCACCATCGACAACATCTACAATCACATCATGAAGCAGGCCACAATAGCTGCCAACAATTCAATTGAGGCAAGACAATCGCCGCCGTCGCCCGAAGCGGCCATACGAATTCACATTAAACGGCCCGCCAGTCAGGCCTCGTCTTGTGTCACCGTCGATCATGAGAGTACCACCTCGGACATGTCACagttgcagcagcagcacgtCCACTTGCGACAGCATCTGCAATCTCAAACGACCACGCCCAATCCCAATCCCAATCCCTCGACGCAGCATTTCTATACGCAAATTGTAAAGCAGGGCAAttcgcaacaacaaacacaacagcAAATGACCGCAGCAGCCGTGGCTcatcaccagcagcagcaacagcatcacACGCTTCTAGCGCAACAACATGAGGAGATGGCATCGTCAATACGCAGTCCCGCTGACAGTCAAGCATCATCGTCGCAGCACATGGCAGACGATCACTCGAACGCCGCCTCGGCCCACTTCTACAATCACATCAGACAGAATTTGCAAGGACCGTACATGTAG
Protein Sequence: MTGLEAAVDGHSAATDIEEWRGWCRLCAKEDAGNISVFFKDEQQPGGAGSATAGCSNGDLSLATAIEKYFWVNITRADEELPRMLCTECFSLVTSLVNFSERVSKVQQMFCTLQHESSATKAKLDLHGIRLKYGLLDEDREHVLMQQTLPEVHYYESKPKINELEERMFEPAATMNPLEQPRIRIKIKKEDILDERNNGEDNEDDDEEDEDNDEDPFHDELDEEEMDEDDEEFLPEKRAKDEPPTTKQAVQQTEIKTELPNQIVDDDKESPKKRRRRHSKRKRSPVTADDDHDEKSDAEPETAEEADLYSPTAAKKSPDSEGIFACTECPRKFKRVQHFRQHMKRTHSKLTPMPALPCSQCTRVFTTPHQLEKHEKVHLPLKLKKVIPCPYCDKKFTSSTLVQTHIKYTHMNERPFICEECGVAVRTNATLKTHMLTHTDYAPFECEVCKKGFKNQIRLRNHMETHDPNKHICAECGLQLNSRATLNRHLLVHSDEMQHKCDYCGRAFKRAKALKNHLILHTGLKPYSCDFCDRTFANGSNCRSHKKKAHPEELAALEAAGGGKMYTRNIPKLEALKAVTKAADNLAPVVSKQSGRFAFGKKPKPLKEEPAEKAPKNNSNNKLTAIITTPTSSTEIELTSLHSTVPNAALMSSSGGVGVSANNNSHNNMAAIPTIDNIYNHIMKQATIAANNSIEARQSPPSPEAAIRIHIKRPASQASSCVTVDHESTTSDMSQLQQQHVHLRQHLQSQTTTPNPNPNPSTQHFYTQIVKQGNSQQQTQQQMTAAAVAHHQQQQQHHTLLAQQHEEMASSIRSPADSQASSSQHMADDHSNAASAHFYNHIRQNLQGPYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -