Basic Information

Insect: Heteromyza rotundicornis
Gene Symbol: -
Assembly: GCA_951394025.1
Location: OX596012.1:58388555-58391027[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.019 1.5 10.0 1.6 1 16 107 122 107 125 0.87

2 8 3.5e-06 0.00028 21.7 1.9 1 23 136 158 136 158 0.98

3 8 5.6e-05 0.0045 17.9 3.8 1 23 163 185 163 185 0.97

4 8 1.3e-06 0.00011 23.0 0.7 1 23 190 212 190 212 0.98

5 8 1.1e-07 8.8e-06 26.5 0.6 1 23 218 240 218 240 0.98

6 8 0.00031 0.025 15.6 4.0 1 23 245 267 245 267 0.96

7 8 9.3e-06 0.00075 20.4 0.5 1 23 273 295 273 295 0.98

8 8 0.099 8 7.7 1.7 1 23 301 324 301 324 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.019	1.5	10.0	1.6	1	16	107	122	107	125	0.87
2	8	3.5e-06	0.00028	21.7	1.9	1	23	136	158	136	158	0.98
3	8	5.6e-05	0.0045	17.9	3.8	1	23	163	185	163	185	0.97
4	8	1.3e-06	0.00011	23.0	0.7	1	23	190	212	190	212	0.98
5	8	1.1e-07	8.8e-06	26.5	0.6	1	23	218	240	218	240	0.98
6	8	0.00031	0.025	15.6	4.0	1	23	245	267	245	267	0.96
7	8	9.3e-06	0.00075	20.4	0.5	1	23	273	295	273	295	0.98
8	8	0.099	8	7.7	1.7	1	23	301	324	301	324	0.96

Sequence Information

Coding Sequence: ATGAGTTACCTTACCGAACATTGTCCTGGCTGTGGGGTCAAACAAAATAACCACAATCGCCTCATCCTCGATAGCTGTGGACACAGAAAGTGCCGAAACTGTTTTCTGGACGATGAAGCCGAATGTTTGCAATGCAGTTGGGACAAAGAGCCCGAAAGTCAAGGCCCAACACACTCACGAAGGCAGCAAGGTACTCCATCGCGAGCCCAGCGCCCAACTCCAGCACGAACGTCCGCCGCCACCAGACTATCAGATGACGACTCCGGGTCATTGCCCAAACACATTCGCCAAATAGTCATGTCGGAGCGTTTGGTGCAGTACCATTGCAACGTTTGCCGGAAGAGCTTCAGCCGGTCGCAGCAGTACTATCACATGGCCTGCGCTGGCGACGAATCTGCCAAGCGGTTTAAGTGTGGTATATGTAATAAGGCTTACATCTCACGGTCGCATCTGAATTACCATATGGAATCTCATACTGGCATAATCTACCATTGCAAAGAGTGCAACAAATCCTTCACGAATAGAGCCGTTCTGAACAAGCATGAAAAGCAACACATTCAATTGCCTTTCCGCTGTACGGAATGCGGCAgggactttaaatttaaagccaGTCTGACCGCTCACATGGACATGCATCTGAACGGGCCGGGCTATCCATGTACAATTTGTGACAAACGTTATACACAGAAGTCATCACTTACACAGCATATGGCTGTCCATGATGaaaacaaatttgaatgcattcattgtgGCAAACGGTTCCAGCGCAACTACTCCTTGACGCTGCATCTGAAGAAACACTCGGACCTGGAGAGTTTCGTGTGTACAATATGCTATCAAAGCTTTAGCGATCTTAATAATTTGATGCGGCACGCCAAAATTCATGGAGaagaaataaaatacaaatgcaCCCACTGTGAAATAACGTCCTTGCGCAAAGACAACATATTGCGGCATGTGAAGAACGTCCATTCCGGCGAAGATATTCAAACTTGCGTGGAGATAGTACGAACCTCGCCAAACCAACAGACTGAACCTTCGACTGAACCAACACCTGAGCCAGCTGAAGAAAACAACCACGATTATGGGCCAGCAGATACAACAGGAGAGAATATACCTATGGAGGTGGTAGAAGAGTATATACCCTTAGAGGCCGCAGAAGAAAGACCCTCAACGTCAACAGCGTATTTGTCCATTGAGGATCTATTGAAAAGAAAGCCAATATACGAGTATAGGCTCAACGAGGAACCATCTCAATATCTGGCGGCCCAGCAAACACTTCCGCAGGATACCAACCAGGGAAATAGCGAGTATCGCTATTCTTTGGGTGCAAACGGGTATCGATCGTCAACCGCATTTGACGGGTATCGGTCGTTGCCCACAACAAACGCATATCTTTCCTCGCCCGCCATTAACGAATACCCGTCGTCGTCAGCAAATAACGAGTATCGTTCTTCACTGGCCATAAGCGAATACAAGTCCACCCCAGGAATACACGAATATAGATCTTCTCCGGTATTGAACGCGTTTGGGTCTTCTCAGGGAATGCATCAGTATACCTCCTCTCCGATCAAAAGTGATTATAGGTCTACTGCGGGAACGAGCGGTTATAGGCCAAGCGATGGATCAAACAATAACATGTCCATGCGAAGCACATACACCCATTTGCCCAGTGTGGCCCCCGCATACGAAGTTGCGGCCAATGAAGGCGCCACATACGATTTGCTGCCCACTCAAGCAACATACGTACAAAGGGTAAAGGATGGACAATACCAGTATATACCCTCCCTGGGAGCCTATATCGTGTATTTGCCCGCCTCTAGACCAACATTCGACTACATACCCAATGAGGATTTAAATGTGACCGCGGATTTTTCCGTGGACATCCACACACCACAGACTGTTGAGAATAGTGTGGTGATCAAGTCGATTGGCAATCCACCCACACCAGTCAAAGTGGAAGCAGCACCGGCACATGACACTACTTCCAGTTCCAATTTGTCCATATTAGAGCCAACGCATAAGAACTACTATGGCAATAAAAGGCATAAAAAGTTCAAGAAAAAATACGATCCCATTGAGTTGTATCGCAAGATTCTGACATCCGACGAAGAAGCGGGCGAGGATAGGGCCCAAGTCACGCCTGTGGCTGTTTTATCACCATCACAGCGAGCCGAGCAGGAGTCAACCGGTCGTCCGTTGCGCTCCACTTTCAATCTGTCGAGCTTCAGCGATATGCATTGGCGTAAGAATGTCAAATACACCTACGAATACCAGGAATATTAA
Protein Sequence: MSYLTEHCPGCGVKQNNHNRLILDSCGHRKCRNCFLDDEAECLQCSWDKEPESQGPTHSRRQQGTPSRAQRPTPARTSAATRLSDDDSGSLPKHIRQIVMSERLVQYHCNVCRKSFSRSQQYYHMACAGDESAKRFKCGICNKAYISRSHLNYHMESHTGIIYHCKECNKSFTNRAVLNKHEKQHIQLPFRCTECGRDFKFKASLTAHMDMHLNGPGYPCTICDKRYTQKSSLTQHMAVHDENKFECIHCGKRFQRNYSLTLHLKKHSDLESFVCTICYQSFSDLNNLMRHAKIHGEEIKYKCTHCEITSLRKDNILRHVKNVHSGEDIQTCVEIVRTSPNQQTEPSTEPTPEPAEENNHDYGPADTTGENIPMEVVEEYIPLEAAEERPSTSTAYLSIEDLLKRKPIYEYRLNEEPSQYLAAQQTLPQDTNQGNSEYRYSLGANGYRSSTAFDGYRSLPTTNAYLSSPAINEYPSSSANNEYRSSLAISEYKSTPGIHEYRSSPVLNAFGSSQGMHQYTSSPIKSDYRSTAGTSGYRPSDGSNNNMSMRSTYTHLPSVAPAYEVAANEGATYDLLPTQATYVQRVKDGQYQYIPSLGAYIVYLPASRPTFDYIPNEDLNVTADFSVDIHTPQTVENSVVIKSIGNPPTPVKVEAAPAHDTTSSSNLSILEPTHKNYYGNKRHKKFKKKYDPIELYRKILTSDEEAGEDRAQVTPVAVLSPSQRAEQESTGRPLRSTFNLSSFSDMHWRKNVKYTYEYQEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -